Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1827 114 1e-23 >seq1827 Length=14047 Score = 114 bits (126), Expect = 1e-23 Identities = 138/185 (75%), Gaps = 11/185 (6%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| |||| || | || ||| ||||||||| | ||| || || || Sbjct 10390 CGCAAACCGACACAGGTAGGCGAGAAGAGTATTCTAAGGCGCGCGGAAGAACTCTCG-TT 10332 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC----TACCCAGAAA 136 |||||||| |||||| |||||| |||||||||||| || |||| || || ||| Sbjct 10331 AAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCCCCGGTAGTGTGAAT 10272 Query 137 TG-----GGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGT 191 | || || ||||| ||| ||| ||| || |||||||| |||||||||||| |||| Sbjct 10271 AGCACGAGGGGGCCGCAGTGAAAAGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTGT 10212 Query 192 GCCAA 196 || || Sbjct 10211 GCGAA 10207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531182992470