Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1827 297 5e-78 >seq1827 Length=14047 Score = 297 bits (328), Expect = 5e-78 Identities = 318/420 (76%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| ||| |||||||| | |||| || |||||||| Sbjct 9960 CGCGGGTAACCTGCATCTTCACAGGTATTAAAATTTCACCGGATCTCTCGTTGAGACAGC 10019 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| Sbjct 10020 GCCCAAGTCGTTACGCCATTCGTGCGGGTCAGAATTTACCTGACAAGGAATTTCGCTACC 10079 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||| ||||||||| | | ||||||| || Sbjct 10080 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTTCACAGCTTCGGATTG 10139 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 |||||| | | |||||||||| ||||||||||||||||| || ||||| || | Sbjct 10140 CTCCTAACCACTCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCC 10199 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 || || || ||| || |||||||||| ||||||||||| ||||| | || || Sbjct 10200 TTACGGCTTCGCACAGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGG 10259 Query 299 CCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCA--CCTTCTCCCGAAGT 356 || | | ||| ||||| || ||||| ||| |||||||||||||| Sbjct 10260 CCCCCTCGTGCT-------------ATTCACACT-ACCGGGGCACCCCTTCTCCCGAAGT 10305 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||||| | | ||||||| |||||||| | ||||||| | ||||||| | || |||| Sbjct 10306 TACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGAATACTCT 10365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260758330560