Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq382 104 1e-20 seq369 98.7 5e-19 seq91 82.4 4e-14 >seq382 Length=61203 Score = 104 bits (114), Expect = 1e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 59973 GGAAAAGAAACTAAAAAGGATTCCCTCAGTAACGGCGAGTGAAACGGGAAGAGCCCAGCG 59914 Query 61 CCGAATC 67 ||||||| Sbjct 59913 CCGAATC 59907 >seq369 Length=46607 Score = 98.7 bits (108), Expect = 5e-19 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| Sbjct 40647 GGAAAAGAAACTAAAAAGGATTCCCTTAGTAACGGCGAGTGAAACGGGAAGAGCCCAGCG 40706 Query 61 CCGAATC 67 ||||||| Sbjct 40707 CCGAATC 40713 >seq91 Length=382489 Score = 82.4 bits (90), Expect = 4e-14 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCA-GGATTCCCTCAGTAA-CGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 313892 AAAAGAAACTAAAAAAGGATTCCCTTAGTAAACGGCGAGTGAAACGGGAAGAGCCCAGCG 313833 Query 61 CCGAATC 67 ||||||| Sbjct 313832 CCGAATC 313826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230392861200