Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1827 430 3e-118 >seq1827 Length=14047 Score = 430 bits (476), Expect = 3e-118 Identities = 323/378 (85%), Gaps = 15/378 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || |||| |||||||||| ||| | |||||||||| |||||| Sbjct 9966 TAACCTGCATCTTCACAGGTATTAAAATTTCACCGGATCTCTCGTTGAGACAGCGCCCAA 10025 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct 10026 GTCGTTACGCCATTCGTGCGGGTCAGAATTTACCTGACAAGGAATTTCGCTACCTTAGGA 10085 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGCT-CTA 178 |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||| Sbjct 10086 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTTCACAGCTTCGGATTGCTCCTA 10145 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || ||||||||||||||||||||||||||||||||||| | ||||| ||| ||| || Sbjct 10146 ACCACTCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCCTTACGG 10205 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294 ||| ||| | ||||||||||||| ||||||||||||||||||| ||| |||||||| Sbjct 10206 CTTCGCACAGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCT 10265 Query 295 --TGTCATAGACA-------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 || || ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 10266 CGTGCTATTCACACTACCGGGGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 10325 Query 346 TTCCTTAACAATAGTTCT 363 ||||||||| | |||||| Sbjct 10326 TTCCTTAACGAGAGTTCT 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062364887680