Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq369 221 2e-55 seq12 96.9 6e-18 >seq369 Length=46607 Score = 221 bits (244), Expect = 2e-55 Identities = 208/260 (80%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || |||| ||||||||| ||||||| |||| | |||||||||||||||||||| Sbjct 39203 ACCCGCTGACTCCACCAGTGTAGCACGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 39144 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| || |||| || | |||| | || | ||||||||||||| | Sbjct 39143 CCTGTTATCGC-TCAATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTTAT-- 39088 Query 122 ACCAACC---ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || |||| | | ||| | |||||||||||| || |||||| ||||||||||||| Sbjct 39087 ACGAACCCGAAGATTCGCCGA--CTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAAT 39030 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | Sbjct 39029 AAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGA 38970 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 38969 GAAAGAGCTTTCAATCTGTC 38950 >seq12 Length=1251648 Score = 96.9 bits (106), Expect = 6e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||| ||| | | |||||||||| |||| ||| |||||||||||||||||||||| ||| Sbjct 1142457 ATCGTAATAATCTAGACAAATCATTCCAACAAGTAAGAACGGCCATGCACCACCAACCAC 1142516 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||| |||||| ||| Sbjct 1142517 CAAATCGAGAAAGAGCTTTCAATCAGTC 1142544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796774488705