Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2495 363 3e-98 seq1519 363 3e-98 seq369 363 3e-98 seq1080 230 4e-58 seq158 111 3e-22 seq1827 82.4 1e-13 >seq2495 Length=8813 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 7333 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 7274 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 7273 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 7214 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 7213 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 7154 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 7153 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 7094 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 7093 GCCACGCTTTCGCGGTCTGTACTC 7070 >seq1519 Length=3173 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2759 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 2818 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 2819 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 2878 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2879 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 2938 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 2939 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 2998 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 2999 GCCACGCTTTCGCGGTCTGTACTC 3022 >seq369 Length=46607 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 10303 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 10244 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 10243 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 10184 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 10183 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 10124 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 10123 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 10064 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 10063 GCCACGCTTTCGCGGTCTGTACTC 10040 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 43697 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 43638 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 43637 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 43578 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 43577 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 43518 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 43517 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 43458 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 43457 GCCACGCTTTCGCGGTCTGTACTC 43434 >seq1080 Length=5493 Score = 230 bits (254), Expect = 4e-58 Identities = 136/142 (96%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 142 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 83 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 82 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 23 Query 150 ACATCGAAGGATCAAAAAGCAA 171 |||||||||||||||||||||| Sbjct 22 ACATCGAAGGATCAAAAAGCAA 1 >seq158 Length=309535 Score = 111 bits (122), Expect = 3e-22 Identities = 95/116 (82%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 105853 TATGGACGCTTGTCTGCCA-AAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTA 105911 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| ||| ||| |||||||||||||||||| ||||| ||| |||| || Sbjct 105912 CCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 105967 >seq1827 Length=14047 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 9405 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 9464 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | Sbjct 9465 CTTGGGACCTACTTCAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 9521 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | | ||||| |||||||| |||| ||||| Sbjct 9522 CCCGTCGATGTGGACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTTT 9576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854371762080