Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1827 302 9e-80 >seq1827 Length=14047 Score = 302 bits (334), Expect = 9e-80 Identities = 240/287 (84%), Gaps = 1/287 (0%) Strand=Plus/Minus Query 53 GTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAACCGTTGACGG 112 |||||||||| |||| | |||| |||||||| | |||| | ||| || || Sbjct 9843 GTTGGGATACCACCCTGATCGTATCTAGGTTCTAACCTGGTACCGTA-ATCCGGTGCGGG 9785 Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 9784 GACAGTGTCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGC 9725 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 |||||| | ||||||| ||| |||||| ||| || | |||||||||||| ||||| | | Sbjct 9724 CCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGAAGAGTGCAAAGGCATAAGGGAGCT 9665 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||||| ||| |||||| ||||||||||||||||||||||| |||||||| ||| | Sbjct 9664 TGACTGCGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGTGGTAC 9605 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| |||| |||||| ||||||||||||||||||||||||| Sbjct 9604 CGCATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGGGATA 9558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982367531680