Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1827 253 4e-65 >seq1827 Length=14047 Score = 253 bits (280), Expect = 4e-65 Identities = 283/369 (77%), Gaps = 17/369 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| ||||||| |||||| | ||| |||||||||||| || |||||||||||||| Sbjct 13490 CTTTACGATCCGAAAACCTTCAT-CACTCACGCGGCATTG-CTCCGTCAGGCTTTCGCCC 13547 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| || |||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 13548 ATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 13607 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||| |||||||| | | |||| ||||||||||||||||||| ||||| || Sbjct 13608 TGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAGCCGTTACCCCA 13667 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAG---GC-CCGAAGGTCC-CC 235 ||||||||||||| || | |||| |||| || | || || ||| ||| Sbjct 13668 CCAACTAGCTAATGCGCCGCAGGCCCATCCCCAAGTGACAGATTGCTCCGTCTTTCCAGT 13727 Query 236 TGCTTTCTCCCGTAG----GACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCC 291 | | ||| || || | ||| |||||||||| ||||||||| ||| |||| Sbjct 13728 TTCCTTCAGGCGAAGAAAACAACTATTCGGTATTAGCTACCGTTTCCGGTAGTTGTCCCA 13787 Query 292 CACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT----CTCAAGAGAAG 346 ||| ||||| || |||| | |||||||||||||||||||| |||| ||||| Sbjct 13788 AACTTGAGGGCAGGTTGCCTACGTGTTACTCACCCGTCCGCCGCTAAGCATCAA-AGAAG 13846 Query 347 CAAGCTTCT 355 ||||||||| Sbjct 13847 CAAGCTTCT 13855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071964570400