Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1827 318 2e-84 >seq1827 Length=14047 Score = 318 bits (352), Expect = 2e-84 Identities = 406/553 (73%), Gaps = 22/553 (4%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGC-TTGTGGGCCCCCTAGACCATCCAGTGCT 111 ||||||||||||||| ||| | ||||| | ||| ||||||| | | ||| |||||| Sbjct 11071 GGCATTCGGAGTTTGACTGAGCTTGGTAACCCTTGCGGGCCCCGCACCCAATC-AGTGCT 11129 Query 112 CTACCTCCGGGAAGAAACACG----CGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 |||||||| | || | ||| ||| |||||| |||||||||||||||| Sbjct 11130 CTACCTCC---ACGACTCTGTTTTCCGAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCA 11186 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||| | |||| |||||| |||| || ||| || || |||||||| || |||||| Sbjct 11187 GCTATCTCCGAGTTCGATTGGAATTTCTCCGCTACCCCCACCTCATCCCCGCACTTTTCA 11246 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | |||||||||| |||||| || ||||| ||||| |||| || || ||| Sbjct 11247 ACGTGCGTGGGTTCGGGCCTCCAGTGCGTGTTACCGCACCTTCACCCTGGACAGGGGTAG 11306 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | ||||||||| || ||| | |||||||||| ||||||||||||| Sbjct 11307 ATCACCCGGTTTCGGGTCTACGTCCACGTACTAAGTCGCCCTATTCAGACTCGCTTTCGC 11366 Query 348 TACGGCTACCCCAC-ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 | ||||| | | | | ||||||| || |||| ||||||| || ||||||| Sbjct 11367 TGCGGCTCCGGCTCTTCACCTTAACCTTGCACGGGAACG-TAACTCGCCGGTTCATTCTA 11425 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||||||||| ||||| ||||||| | |||| ||| ||||| ||| Sbjct 11426 CAAAAGGCACGCCATCACC-----CCTAAAACG------GGCTCTGACTTTTTGTAAGCA 11474 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || |||||||||| |||||||||||||| | ||||| |||||||||||||||||||||| Sbjct 11475 CACGGTTTCAGGTTCTATTTCACTCCCCTTCCGGGGTGCTTTTCACCTTTCCCTCACGGT 11534 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| | | ||||||||| | | | ||||||||| ||| | | |||||| ||| ||||| Sbjct 11535 ACTGCTTCACTATCGGTCGCTAGGAAGTATTTAGCCTTGGCAGATGGTCCTGCCGGATTC 11594 Query 587 ACACGAAATTTCA 599 | ||| ||||| Sbjct 11595 ATACGGGGTTTCA 11607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817539928320