Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1827 259 1e-66 >seq1827 Length=14047 Score = 259 bits (286), Expect = 1e-66 Identities = 301/393 (77%), Gaps = 10/393 (3%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||| |||||||| || |||||| ||||| || |||| | Sbjct 11241 TTTTCAACGTGCGTGGGTTCGGGCCTCCAGTGCGT-GTTACCGCACCTT-CACCCTGGAC 11298 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA-GACGCCCTAGTAAGA 148 | || |||||| |||||||| |||||||| ||| | |||| | ||||||| | ||| Sbjct 11299 AGGGG-TAGATCACCCGGTTT-CGGGTCTACGTCCACGT-ACTAAGTCGCCCTATTCAGA 11355 Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 |||||||| |||| || |||| || ||| | | | |||| ||| ||| |||| Sbjct 11356 CTCGCTTT-CGCTGCGGCTCCGGCTCTTCACCTTAACCTTGCACGGGAACGTAACTCGCC 11414 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGC 267 | |||| ||||||||| |||| |||||| ||| |||||| ||| ||||| || Sbjct 11415 GGTTCATTCTACAAAAGGCACGCCATCACCCCTAAAAC-GGGCTCTGACTTTTTGTAAGC 11473 Query 268 ATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 327 | ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 11474 ACACGGTTTCAGGTTCTATTTCACTCCCCT-TCCGGGGTGCTTTTCACCTTTCCCTCACG 11532 Query 328 GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATAT 387 ||||| ||||||||||||| | | ||||||||||||||| |||||||| || || Sbjct 11533 GTACTGCTTCACTATCGGTCGCTAGGAAGTATTTAGCCTTGGCAGATGGTCCTGCCGGAT 11592 Query 388 TCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| || ||||| ||||| ||| ||||||| Sbjct 11593 TCATACGGGGTTTCACGTGCCCCGCACTACTCG 11625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241558965120