Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1827 201 2e-49 >seq1827 Length=14047 Score = 201 bits (222), Expect = 2e-49 Identities = 247/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||| ||||||||||||||||| Sbjct 13522 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTCCCGTAG 13581 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| || Sbjct 13582 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCAT 13641 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| | ||||||||| ||||| ||||| ||||||| | Sbjct 13642 CGTCGCCTTGGTGAGCCGTTACCCCACCAACTAGCTAATGCGCCGCAGGCCCATCCCCAA 13701 Query 181 GCGATA-AATCTTTGGTCAAAGAATGATGCCATCCTCTGA-------CATTATGCGGTAT 232 | || | | | | ||| | | | || || || | ||| |||||| Sbjct 13702 GTGACAGATTGCTCCGTCTTTCCA-GTTTCCTTCAGGCGAAGAAAACAACTATTCGGTAT 13760 Query 233 TAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292 |||| ||||||| ||| | ||| || | |||||||||| ||||||||||||| Sbjct 13761 TAGCTACCGTTTCCGGTAGTTGTCCCAAACTTGAGGGCAGGTTGCCTACGTGTTACTCAC 13820 Query 293 CCGTCCGCCACTAAGCTATATATCCAGCAAGCTT 326 ||||||||| |||||| || | ||||||||| Sbjct 13821 CCGTCCGCCGCTAAGC-ATCAAAGAAGCAAGCTT 13853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998367002880