Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1827 302 1e-79 >seq1827 Length=14047 Score = 302 bits (334), Expect = 1e-79 Identities = 312/401 (78%), Gaps = 8/401 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||||| |||| | || ||| | | | | Sbjct 10622 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGAGCGGACGAGCCTTCCT 10681 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||| | |||||||| ||||| ||| || || ||||||| || Sbjct 10682 CAGGAACCCTTAGGCTTTCGGCGGATCAGATTCTCACTGATCTTTTCGTTACTCATACCG 10741 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 ||||||||||| | || | |||| | | | | || || ||||| | || | || | Sbjct 10742 GCATTCTCACTTGTATAATGTCCAGCGCTCCTT-ACGGTACACCTTCAACCCTTATACAA 10800 Query 180 CGCTCCCCTACCC---AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||||||||| | || || |||| |||||||| || | || ||||||| Sbjct 10801 CGCTCCCCTACCCCTGATGCAAGCATCAAGCCATAGCTTCGGTGG-TGTGTTTAGCCCCG 10859 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 |||||| ||||||| || ||||| ||||||||||||||||||||||||||||| | ||| Sbjct 10860 TTACATTTTCGGCGCAGAGTCACTCGACCAGTGAGCTATTACGCACTCTTTCAATGGTGG 10919 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| |||||||| |||||||||||| ||||||||||||||||||||||| | || Sbjct 10920 CTGCTTCTAAGCCAACATCCTGGTTGTCTGTGCAACTCCACATCCTTTCCCACTTA-ACA 10978 Query 357 C-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | ||||| ||| |||||||||||| |||||||||||||||| Sbjct 10979 CACACTTGGGGACCTTAGCTGATGGTCTGGGCTGTTTCCCT 11019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177561080320