Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1827 259 1e-66 >seq1827 Length=14047 Score = 259 bits (286), Expect = 1e-66 Identities = 312/422 (74%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||| | ||||| ||||| ||| |||||||||| ||| | |||||||| ||||||| Sbjct 13490 CTTTACGATCCGAAAACCTTCATCACTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCAT 13549 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || | || |||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 13550 TGCGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 13609 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||| |||||||| | |||| | |||||||||| |||| ||| ||||||| || Sbjct 13610 TGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAGCCGTTACCCCACC 13669 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAG---GCCCGAAGGTCCCCCTCT 240 ||||||||||| | || ||||| ||||| || || | | || | | Sbjct 13670 AACTAGCTAATGCGCCGCAGGCCCATCCCCAAGTGACAGATTGCTCCGTCTTTCCAGT-T 13728 Query 241 TTGGTCTTGCGACG-------TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCC 293 | || |||| | ||| |||||||||| ||||||||| || ||| |||| Sbjct 13729 TCCTTCAGGCGAAGAAAACAACTATTCGGTATTAGCTACCGTTTCCGGTAGTTGTCCCAA 13788 Query 294 TCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCA 352 | |||| ||| || | ||||||||||||||||| || || | ||| |||| Sbjct 13789 ACTTGAGGGCAGGTTGCCTACGTGTTACTCACCCGTCCGCCGCTAAGCATCAAAGAAGCA 13848 Query 353 AGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTG 412 |||| ||| ||| ||||||||||||| |||||| |||||||||||||| ||| Sbjct 13849 AGCTTCTTATCAACTCCGCTCGACTTGCATGTATTAGGCATGCCGCCAGCGTTCGTCCTG 13908 Query 413 AG 414 || Sbjct 13909 AG 13910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222359599680