Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1827 383 5e-104 >seq1827 Length=14047 Score = 383 bits (424), Expect = 5e-104 Identities = 393/513 (77%), Gaps = 39/513 (8%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||||||||||||||| ||| || |||||||||| | ||| ||| ||||| Sbjct 13832 AGCGGCGGACGGGTGAGTAACACGTAGGCAACCTGCCCTCAAGTTTGGGACAAC-TACCG 13774 Query 83 AAA--GGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGC-- 138 || |||| |||||||| ||| | | ||| |||| || ||| |||| Sbjct 13773 GAAACGGTA-GCTAATACCGAATAGT-TGTTTTCTTCGCCTGAAGGAAACTGGAAAGACG 13716 Query 139 ------TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGC 192 || | | | |||| | || ||| | |||||||||||||| ||||||||| Sbjct 13715 GAGCAATCTGTCACTTGGGGATGGGCCTGCGGCGCATTAGCTAGTTGGTGGGGTAACGGC 13656 Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct 13655 TCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGA 13596 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 ||||| ||| ||||||||||||||||||||| |||||| || | |||||||| ||||||| Sbjct 13595 CACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGGCGAAAGCCT 13536 Query 313 GATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGG 372 || | ||||| |||||||||| |||||||| ||||| |||||||||||||| || || Sbjct 13535 GACGGAGCAATGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAGCTCTGTTGCCAGGG 13476 Query 373 AAGA-------------TAA------------TGACGGTACTTGAGGAGGAAGCCCCGGC 407 |||| ||| ||||||||| |||| || |||||||||| Sbjct 13475 AAGAACGCTTGGGAGAGTAACTGCTCTCAAGGTGACGGTACCTGAGAAGAAAGCCCCGGC 13416 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 467 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | | Sbjct 13415 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATTA-TTG 13357 Query 468 GGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||| | ||| ||| ||| ||||||| Sbjct 13356 GGCGTAAAGCGCGCGCAGGCGGTCATTTAAGTC 13324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497550504320