Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq369 208 1e-51 >seq369 Length=46607 Score = 208 bits (230), Expect = 1e-51 Identities = 237/311 (76%), Gaps = 8/311 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGG-CTTCTTA 78 ||||||||| || |||||||||||| | | ||| || | ||| ||||||| Sbjct 39041 GAGCGAGACTCTAGCCTGCTAAATAGTCGGCGAATCTTCGG--GTTCGTATAACTTCTTA 39098 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||| | ||| | ||||| || | ||||| | ||||||||||||||||||||| Sbjct 39099 GAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCCT 39156 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| | |||| ||||||| ||||||||| ||| || || ||| || || || Sbjct 39157 TAGATGTCCGGGGCTGCACGCGTGCTACACTGGTGGAGTCAGCGGGTTTTTC--CTATGC 39214 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || ||||| | ||||| | | ||| ||| | || ||||||| | |||| |||||| Sbjct 39215 CGAAAGGTATCGGTAAACCGTTGAAATTCTTCCATGTCCGGGATAGGGTATTGTAATTAT 39274 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||| ||| |||||||||||||||||||| | | ||||||||| | ||||||||||||||| Sbjct 39275 TGCCCTTAAACGAGGAATGCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATTACGTCCC 39334 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 39335 TGCCCTTTGTA 39345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947168695040