Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1827 279 2e-72 >seq1827 Length=14047 Score = 279 bits (308), Expect = 2e-72 Identities = 360/485 (74%), Gaps = 13/485 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||||| ||| ||| |||||||||||||| ||||||||||| Sbjct 11359 CGAGTCTGAATAGGGCGACTTAGTACGTGGACGTAGACCCGAAACCGGGTGATCTACCCC 11300 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||||||||||||||||| ||||||| |||||||||| | |||||||| Sbjct 11299 TGTCCAGGGTGAAGGTGCGGTAACACGCACTGGAGGCCCGAACCCACGCACGTTGAAAAG 11240 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| || |||||| || |||| | || | |||| ||| |||||||||||| Sbjct 11239 TGCGGGGATGAGGTGGGGGTAGCGGAGAAATTCCAATCGAACTCGGAGATAGCTGGTTCT 11180 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC--GGGGGTAGAGCACTGTTA 237 | |||||| |||||| ||||| | || || || |||||||||||| | Sbjct 11179 CCCCGAAATAGCTTTAGGGCTAGCCTCGGAAAACAGAGTCGTGGAGGTAGAGCACTGAT- 11121 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAAC-CATTGCAAACTCCGAATGCGCATCAGTTT 296 ||| | |||| | | ||||||| | || | |||||||||||||| ||| || | Sbjct 11120 TGGGTGCGGGGCCCGCAAGGGTTACCAAGCTCAGT-CAAACTCCGAATGC-CAT-AGACT 11064 Query 297 TAC-CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 ||| ||||||| || || |||||||| ||| | | | ||| || | || || Sbjct 11063 TACTTCCGGGAGTCAGACAGTGAGTGCTAAGATCCATTGTCAAAAGGGAAACAGCCCAGA 11004 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||||| ||| || || | ||||| | || || || |||| ||| Sbjct 11003 CCATCAGCTAAGGTCCCCAAGTGTGTGTTAAGTGGGA--AAGGATGTGGAGTTGCACAGA 10946 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | ||||||||||||| |||||||||| |||| ||||||||||||| |||||||| | Sbjct 10945 CAACCAGGATGTTGGCTTAGAAGCAGCCA-CCATTGAAAGAGTGCGTAATAGCTCACTGG 10887 Query 476 TCGAG 480 ||||| Sbjct 10886 TCGAG 10882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689544158720