Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1827 104 4e-20 >seq1827 Length=14047 Score = 104 bits (114), Expect = 4e-20 Identities = 176/251 (70%), Gaps = 17/251 (7%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| || |||||||| |||| | || ||||||||||||| | ||| | Sbjct 12028 AGAGCACACGGAGGATGCCTAGGCGCTAGGAGCCGATGAAGGACGTGGCGAACAACGAAA 11969 Query 61 A-GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 || ||||||| | || || |||||||||| | | ||||||||||||||||| | Sbjct 11968 CTGCCTCGGGGAGCT-GTAAGCAAGCTTTGATCCGGGGGTGTCCGAATGGGGAAACCCAG 11910 Query 120 CCCTTTGGGTCATTGCATG----------CTGAATACATAGGTA-TGCAAAGCGA-ACGC 167 | | |||| ||| | | |||||||||||||| || | || | || Sbjct 11909 C---TGGGGTAATTTCCAGTTACTCACAACTGAATACATAGGTTGTGTAGAGGCATACCA 11853 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || ||||||||||||||||||| | ||||| ||||| ||| | |||||| ||||| Sbjct 11852 GGGGAACTGAAACATCTAAGTACCCTGAGGAAGAGAAAACAATAGTGATTCCGTCAGTAG 11793 Query 228 TGGCGAGCGAA 238 |||||||||| Sbjct 11792 CGGCGAGCGAA 11782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918369646880