Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq369 482 8e-134 seq193 367 4e-99 seq261 143 9e-32 seq2495 104 8e-20 seq154 95.1 4e-17 seq158 91.5 5e-16 seq1519 84.2 7e-14 seq1827 75.2 4e-11 >seq369 Length=46607 Score = 482 bits (534), Expect = 8e-134 Identities = 426/525 (81%), Gaps = 14/525 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 10006 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 9947 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 9946 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 9887 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | | |||| | ||| ||| | Sbjct 9886 ACGGTGCCATAAAATGGCTCCGCTTAAAGCTTCGAAAAAAGGCCGTGAGG-CCAATTCTC 9828 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || ||||||||||||| ||| ||||| | Sbjct 9827 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGGCGACCGAA--G 9770 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 9769 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 9710 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 9709 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 9650 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 9649 GATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAAT 9590 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9589 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTA 9530 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| ||| |||||||||||||||||||||| Sbjct 9529 CTCGAATTACTACGATTTAACACTCAGAGCACTGGGCAGAAATCA 9485 Score = 482 bits (534), Expect = 8e-134 Identities = 426/525 (81%), Gaps = 14/525 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 43400 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 43341 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 43340 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 43281 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | |||| | ||| ||| | Sbjct 43280 ACGGTGCCATAAAATGGCTCCGCTTAAAGCTTCGAAAAAAAGCCGTGAGG-CCAATTCTC 43222 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || ||||||||||||| ||| ||||| | Sbjct 43221 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGGCGACCGAA--G 43164 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 43163 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 43104 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 43103 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 43044 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 43043 GATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAAT 42984 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42983 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTA 42924 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 42923 CTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 42879 >seq193 Length=297172 Score = 367 bits (406), Expect = 4e-99 Identities = 253/284 (89%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCAC 243 || |||||||| | |||| | || ||||||||||||| ||| ||||| | ||||||| Sbjct 111773 GAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGGCGACCGAA--GTCTCCCAC 111716 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 ||| |||||||||||| | | ||||||| ||| |||||||||||||||||||||||| Sbjct 111715 CTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 111656 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 111655 TTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 111596 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 111595 TTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGC 111536 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 111535 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 111492 >seq261 Length=104794 Score = 143 bits (158), Expect = 9e-32 Identities = 214/297 (72%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||| ||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 97810 CTTTTGCTGTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 97751 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 97750 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 97691 Query 127 ----GGCCCGCGAAGGAC----CTTAACGC-CAGAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | | ||| || ||| ||| | Sbjct 97690 ACGGTGCCATAAAATGGCTCCGCTTAAAGCTTCGAAAAAAGGCCGTG-AGGCCAATTCTC 97632 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || ||||||||||||| ||| ||||| | Sbjct 97631 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGGCGACCGAA--G 97574 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 ||||||| ||| |||||||||||| | | ||||||| ||| | ||||||||||| Sbjct 97573 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAAATAGAGTCAAGC 97517 >seq2495 Length=8813 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 7036 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 6977 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || Sbjct 6976 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTC 6927 >seq154 Length=279404 Score = 95.1 bits (104), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | | Sbjct 133814 TTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGAT 133873 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAA 118 || | |||||| ||| ||||| |||||| ||| | ||||| |||| |||| Sbjct 133874 TTGATAGATGTACCGTCCCAGTCAAACTTCCCGCTTGACACTGTCTTCAA 133923 >seq158 Length=309535 Score = 91.5 bits (100), Expect = 5e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| |||||| Sbjct 106001 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTAT- 106059 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||| | | |||| |||| || Sbjct 106060 ATTTGATAGATGTACCGCCCCAGGCAAACTCCACGCTTGACTCTGTCTTC 106109 >seq1519 Length=3173 Score = 84.2 bits (92), Expect = 7e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 3056 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 3115 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAAC-TCCCCACCTGACAATGTC 113 ||| | |||||| |||||| | |||| ||||| | ||||| |||| Sbjct 3116 ATTTGATAGATGTACCGCCCAGTCAAAACTTCCCCGCTTGACACTGTC 3163 >seq1827 Length=14047 Score = 75.2 bits (82), Expect = 4e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||| |||||| |||| |||| | ||| |||| ||| |||| ||||||||| || Sbjct 10027 TCGTTACGCCATTCGTGCGGGTCAGAATTTACCTGACAAGGAATTTCGCTACCTTAGGAC 10086 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-GGTT 478 || |||||||| ||||||||||| | |||| |||| Sbjct 10087 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGGTT 10124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635145956640