Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1827 425 2e-116 >seq1827 Length=14047 Score = 425 bits (470), Expect = 2e-116 Identities = 438/569 (77%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||||||||||||||||||| ||| || ||||| | ||||| || Sbjct 9642 TCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTATGCCTTTGCACTCTTCGAATGATTTCC 9701 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||||||||||||||||||||||||||| ||| ||||| | |||||||||| Sbjct 9702 AACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCAG 9760 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| |||||| | |||||||||| || ||| | || | |||||||| | | | Sbjct 9761 TCAAACTGCCCACCTGACACTGTCCCCGCACCGGATTACGGTACCAGGTTAGA-ACCTAG 9819 Query 181 -TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 |||| |||| ||||||| |||| | |||||| || ||| || ||| || Sbjct 9820 ATACGATCAGGGTGGTATCCCAACGTTGCCTCCACGCAAGCTGGCGCTCACGTTTCAAAG 9879 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||||||| ||| | || ||| || ||||| |||||| ||| ||| ||| Sbjct 9880 GCTCCCACCTATCCTGTACAGATCGTACCCAAATTCAATATCAAGCTGCAGTAAAGCTCC 9939 Query 300 C-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||||| |||| || |||| | ||| ||||||| || ||| | ||||||||| Sbjct 9940 ATGGGGTCTTTCCGTCTTGTCGCGGGTAACCTGCATCTTCACAGGTATTAAAATTTCACC 9999 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 || || | ||||||||||| |||||||||||||||||||| |||| ||| ||||| Sbjct 10000 GGATCTCTCGTTGAGACAGCGCCCAAGTCGTTACGCCATTCGTGCGGGTCAGAATTTACC 10059 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 10060 TGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 10119 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTC---ACGAGTCCTCTTAACCTTCCAGC 535 | || | || || || ||||| || | ||| |||||||||||||| Sbjct 10120 CGGTTCACAGCTTC-----------GGATTGCTCCTAACCACTCCCCTTAACCTTCCAGC 10168 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||||| |||||||| ||| Sbjct 10169 ACCGGGCAGGCGTCAGCCCGTATACTTCG 10197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702343735680