Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq369 161 3e-37 seq11 107 6e-21 seq255 77.0 1e-11 >seq369 Length=46607 Score = 161 bits (178), Expect = 3e-37 Identities = 296/429 (69%), Gaps = 41/429 (10%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 38182 TGGATAAGTTTCGCGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTTTCTAAGGCTCCCTC 38123 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||| ||||||||| |||| ||||||||||| |||||||||| ||| | |||| Sbjct 38122 TCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAACAACCATGGTAGTCCAATGAACTAC 38063 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 |||| |||||| |||||||| ||| | ||| | | | || ||| Sbjct 38062 CATC--TAGTTGAAAGGGCAGA----------CACCCTTTTCGGAT-AGAGTCAGTCGAA 38016 Query 255 TC-----GTTAA----GTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTT 305 | || || ||||| || ||| ||| | | | || |||| | | | | Sbjct 38015 ACTGACAGTAAACTGCTTTATTCAGAGTCAACAAACAACGTCCGAGAACGTTTGGTCTGT 37956 Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGT-TTTTAGCATGTATTAGCTCTAGAATT 364 |||||||| | |||||| | || ||||| | | |||||||||||||| || ||| Sbjct 37955 -TCTAATAATTGCACCCCGCCTTGCGTTGGGGTATAGTTGCATGTATTAGCTCCAGTATT 37897 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA-ACGATAACTGATTTAATGAGCC 423 || | ||||||||| ||| | | | ||||| |||| ||| | ||||||||| Sbjct 37896 TCCGCAGTTATCCATATAGGA------TTCCGAATAAGGTGATATCTGCTCTAATGAGCC 37843 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 | |||| |||| |||| | | | || ||||||||||||||||||| | Sbjct 37842 GTACGCAATTTC---------ATTGATGAATCAAAG-CATGCATGGCTTAATCTTTTACT 37793 Query 484 CAAGCATAT 492 ||||||| Sbjct 37792 TGAGCATAT 37784 >seq11 Length=2072269 Score = 107 bits (118), Expect = 6e-21 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || || ||||||||||| | |||| |||| |||||||| | |||||||| ||| Sbjct 324978 TAAGTTTCGGGCCTGCTGCCTGCAATGGACAGGGTAACCGTTTCTGAAGCTCCCTCACCG 325037 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 ||||| |||||| |||| ||||||||||| |||||||||| ||| | |||||||| Sbjct 325038 GAATCTAACCCTTATTCACCGTTACCCGTATCAACCATGGTAGTCCAATGAACTACCATC 325097 Query 199 GAAAGTTGATAGGGCAGA 216 || ||| ||| |||| Sbjct 325098 --TAGATGAAAGGCCAGA 325113 >seq255 Length=177667 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/131 (76%), Gaps = 7/131 (5%) Strand=Plus/Minus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCC--GTTTCTCAGGCTCCCTCTCCGGAATC-GA 145 ||| |||||| | |||||| ||||||||| | | | ||||||||||||||| || || Sbjct 112626 GCCAGCTGCCATTCTTGGACGTGGTAGCCCGGATATTACGGCTCCCTCTCCGGAGTCGGA 112567 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| ||| | ||||| | |||||||| ||| | |||||||| |||| Sbjct 112566 ACCCTTATTCTCCGCTCCCCGTACCAATCATGGTAGTCCAAGA-ACTACCATC--TAGTT 112510 Query 206 GATAGGGCAGA 216 | |||||||| Sbjct 112509 -AAAGGGCAGA 112500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510350081280