Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17 170 2e-37 >seq17 Length=1338299 Score = 170 bits (188), Expect = 2e-37 Identities = 256/361 (71%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| | ||| ||||||| ||||||||| ||||| || ||||| ||| || Sbjct 168047 TGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCCTTCTCGACACGTTTCATGAA 168106 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GT 66404 ||||| || | ||||||||| ||| | || || || || | || || ||| || Sbjct 168107 GAGATCTGGAACCCAGAGGGCAAGGAACAAGTCACGAGCGCGCTCTTCTTCTGGGCCAGT 168166 Query 66405 GATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | |||||||| | ||| |||||| |||| |||||| |||||||| || || ||||| | Sbjct 168167 G-TTTTTGCGGAGAGCGACGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGATAGATAG 168225 Query 66465 CGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGA 66524 |||| | || ||| ||| || ||||| ||||| || ||||| |||||| | | Sbjct 168226 CGAATGCACCTGGACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTGTTGTAAA 168285 Query 66525 CACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTC 66584 |||| | ||| || | || || || || | |||||||| ||| ||||| ||||| Sbjct 168286 CACGGAGCATTGGAATAAGTCCATTGGAAGTTCCATTGGTTCCGGCGATGACTGATCCGG 168345 Query 66585 GTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCAC 66644 || || || | ||| ||||| |||||||| || || || ||||||||||| |||| Sbjct 168346 TGGCACGAATCTTGTGGACATTGAGACCAATTCCTCCAGCACTCTTCGAGATGAGTGCAC 168405 Query 66645 A 66645 | Sbjct 168406 A 168406 Score = 102 bits (112), Expect = 6e-17 Identities = 243/363 (67%), Gaps = 27/363 (7%) Strand=Plus/Plus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGA---ACGTCTC 65869 || || || ||||||||||||| || || ||||||||||||| || || |||| Sbjct 167359 TCAGCGAGTCCTTGAACTCCAAGTCCAATTGGACGATGACGCATGTTCGAGTTACGTGCT 167418 Query 65870 GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACA 65929 | ||| || ||||| ||||||| |||||| || |||| ||| || | ||| Sbjct 167419 TCTTCA---ACTGGGTAATAATTGACATCGATGATCTTGTTCAGATTTTTCGTTATCACT 167475 Query 65930 TGCACGATACGTC-GCAA--TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCG 65986 | | || || |||| || || ||||||||| || || |||||| Sbjct 167476 TTG--GTAACCTCAGCAAGCTTCTT-GAAATCAAACGTCTTC------TCAGGAGTG--- 167523 Query 65987 GACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGA 66046 ||||| | || || | ||| || || ||||||||||| ||||| || ||| Sbjct 167524 ------ACAAATCGGTTGAGAGCGATAGAAGCAAGATTGCAGACAGCGATCTCATCTGGA 167577 Query 66047 GCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGT 66106 || | ||||||| ||||| ||||||||||| ||| ||||| || | || ||| Sbjct 167578 GCAGAGTACTCGATGATTTCCGTGCACAGATTGGAGCATTTGATGGTTCCGAGGTTTTGT 167637 Query 66107 TGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACT 66166 ||||| |||||||||| ||||||||||| | ||||| ||| || || || | | Sbjct 167638 TGATTGGACTTGCGATTGGCAGCATCCTTGTAGGTGATGTATGGAAGTCCAGTTTCGATT 167697 Query 66167 TGG 66169 ||| Sbjct 167698 TGG 167700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551986085200