Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq324 363 3e-98 seq1 230 4e-58 seq13 196 8e-48 seq5 141 2e-31 >seq324 Length=2336 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 441 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 500 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 501 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 560 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 561 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 620 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 621 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 680 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 681 GCCACGCTTTCGCGGTCTGTACTC 704 >seq1 Length=15455979 Score = 230 bits (254), Expect = 4e-58 Identities = 144/155 (93%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 417376 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 417435 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| Sbjct 417436 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTTCGCATGATAGGAAGAGCCG 417495 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||||||||||||||| ||||||||||| || Sbjct 417496 ACATCGAAGGATCAAAAAAGCACGTCGCTATGGAC 417530 >seq13 Length=21540570 Score = 196 bits (216), Expect = 8e-48 Identities = 144/168 (86%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 || ||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 16175573 ACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAA 16175632 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 ||||| |||||| ||||||| ||||||||||||||||| ||| | |||||||||||| Sbjct 16175633 CGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCA 16175692 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||| || |||||||||||| |||||||||||| |||||||| Sbjct 16175693 ACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTA 16175740 Score = 161 bits (178), Expect = 2e-37 Identities = 118/137 (86%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 19222583 AGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 19222642 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||| ||||||| ||| ||| ||| |||||||||||||||||| | Sbjct 19222643 TAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGC 19222702 Query 277 TTTCATGGTTTGTATTC 293 |||| ||| |||| || Sbjct 19222703 TTTCGCGGTCTGTACTC 19222719 >seq5 Length=14578851 Score = 141 bits (156), Expect = 2e-31 Identities = 134/170 (79%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC-TATGAA 183 ||||||| ||||||||||||||||| || ||||||||||||||| ||||||| |||| | Sbjct 14448587 TGCTTCGCAATGATAGGAAGAGCCGATATGGAAGGATCAAAAAGCCACGTCGCCTATGGA 14448646 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||||||||||||||||| || | ||||||| |||||| ||||||| | | | Sbjct 14448647 AGCTTGGCTGCCACAAGCCAGTTTTCTCATTGGTAACATTTCTGACACCTCTTGTTTGAT 14448706 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| |||| ||||||| || | |||| ||| |||| || Sbjct 14448707 ATAACCAGGATTAAAAGAATCGATATGCTAAGATTTCGCGGTCTGTACTC 14448756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854396864352