Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq324 473 4e-131 seq13 104 8e-20 >seq324 Length=2336 Score = 473 bits (524), Expect = 4e-131 Identities = 424/525 (81%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 738 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 797 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| ||| |||| | ||||| |||| || | | || Sbjct 798 ATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTC 857 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | | |||||| ||| ||| | Sbjct 858 ACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAG-CCAATTCTC 916 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || |||||||||||| ||| ||||| | Sbjct 917 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAA--G 974 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 975 TCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 1034 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1035 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 1094 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 1095 GATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAAT 1154 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1155 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTA 1214 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 1215 CTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 1259 >seq13 Length=21540570 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 19222753 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 19222812 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || Sbjct 19222813 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTC 19222862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635193998816