Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07-
02] 367 sequences; 108,384,165 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5 174 1e-38
seq1 82.4 6e-11
>seq5
Length=14578851
Score = 174 bits (192), Expect = 1e-38
Identities = 444/673 (66%), Gaps = 2/673 (0%)
Strand=Plus/Minus
Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345
||| |||| | ||| ||||||| ||||||||| ||| | ||| || || ||| ||
Sbjct 9911126 TGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCTTTTTCGACGCGCTTCATGAA 9911067
Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405
||||| || | |||||| || |||| | || || || |||| ||| || |||
Sbjct 9911066 GAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGT 9911007
Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465
|| || || | | | ||||| ||||| ||||| |||||||| |||| |||||||||
Sbjct 9911006 GTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCATGGCTCCAAGTAGATGGC 9910947
Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525
||| | || |||||| || ||||| || ||||| |||||| |||||| ||||
Sbjct 9910946 GAATGCTCCTGGTCGTTTGTTACCTCCTTGATCAACGTAACGAGCGGTGTTGTTGTAGAC 9910887
Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585
||| | ||| |||| ||| || || ||| | |||||||| ||| | || || ||
Sbjct 9910886 ACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTTCCGGCAATCACTGAGCCAGT 9910827
Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645
||| || || | ||| ||||| ||||| || || || || ||||||| || ||| ||
Sbjct 9910826 TGCACGGATCTTGTGCACATTGAGACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCA 9910767
Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705
| || || | | || ||| ||| ||||| | | || |||| | | ||||
Sbjct 9910766 CTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCA 9910707
Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765
|||| | || || | || | | |||||| || || | || || || |
Sbjct 9910706 TGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCAT 9910647
Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825
||| | ||||| | ||||||||||| ||| | || ||||| || || || ||
Sbjct 9910646 GTACCGTTCGGACATCAAGTTGTACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGAT 9910587
Query 66826 CCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATAT 66884
|| | || ||| |||||||| | | || || | |||||| | | ||||| |
Sbjct 9910586 TCCAATGGCGACA-CGCATCAGCATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCT 9910528
Query 66885 GCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAG 66944
| | |||||| || || || ||||||| || ||||| | |||| | |||| |
Sbjct 9910527 TGAGAAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGT 9910468
Query 66945 CATGCACGATGGC 66957
| | ||||||||
Sbjct 9910467 CGTAGACGATGGC 9910455
Score = 118 bits (130), Expect = 8e-22
Identities = 232/336 (69%), Gaps = 14/336 (4%)
Strand=Plus/Minus
Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317
||||| ||| || | || || |||| || |||||||| | |||||||| ||||| ||
Sbjct 11386346 GAACGCTTCTCGAACGAAGTCAAAGTCTCCGAGGCGCGCTTCTTCTACGGATTCCAAATC 11386287
Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377
||||| |||||| | ||||||||||||||| |||||||| || |||||| | ||
Sbjct 11386286 GCCATCGAGAATATTCACTCGGAGATGTACTCAAAGCTCATCGAGACCTACATCCGCGAT 11386227
Query 61378 CGGGCGGAACG--TGAACGATTGTTCAATGCCA---TCGAG-ACGATACCGGCGGTGAAG 61431
| ||| || |||| ||||||| |||| ||||| ||| | | |||
Sbjct 11386226 GAGAAGGAGCGCATGAA--GCTGTTCAACGCCATCTTCGAGTTCGA----GTTCATCAAG 11386173
Query 61432 CGGAAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG 61490
||| || || ||||| |||| |||||| || || | ||| | || | |||||
Sbjct 11386172 AAGAAGGCCGACTGGGCGCTTC-GTTGGATTTCCGACACCAAGGCCTCGTTCGCCGAACG 11386114
Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550
|| | ||||| || | |||||||| | || || || |||||||| || | || ||
Sbjct 11386113 GCTGATCGCATTCGCCGCCGTCGAGGGCATCTTCTTTAGCGGATCGTTCGCATCGATTTT 11386054
Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586
||| | ||||| || || || ||||| ||| ||||
Sbjct 11386053 CTGGCTCAAGAAGCGCGGTCTGATGCCAGGTTTGAC 11386018
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067
|||| ||| ||||| ||||| ||||| | |||||| ||||| | ||||||| ||| ||
Sbjct 9911629 GCAATAGAAGCGAGATTGCAAACAGCAACCTCGTCTGGAGCAGAGTACTCGATAATCTCA 9911570
Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127
||||||| || ||| || || ||||| || || || || ||||||||||
Sbjct 9911569 GTGCACAAGTTGGAGCACTTGATAGTTCCCAAGTTTTGCTGGTTCGACTTGCGATTGGCG 9911510
Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
||||||||||| | ||||| ||| |||||||| | |||
Sbjct 9911509 GCATCCTTGTAGGTGATGTATGGAAGTCCGGTCTCGATTTG 9911469
>seq1
Length=15455979
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 9157 TTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATA 9216
||||||| ||||| ||| |||||||||| ||| ||| | |||||||||||||| || |
Sbjct 10990844 TTTACGGATTCCAATGGAGACATTTCGGAGCTAAATACGTGGATTGTCATACGGATTACA 10990785
Query 9217 CGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA 9276
| || |||||| | |||||| | || || || | || ||| | | || ||| |
Sbjct 10990784 CTGGACAAGGTATTGATCAGCTAGCTGAAGTCATTCGACAAATCAAGGAAGAACCGGACA 10990725
Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACG--ATTTGGACAAGATGGTATTGCC 9334
| || | || ||| || | || |||||||| | || | | || | ||||||| | ||
Sbjct 10990724 GCAGAAGAATCATTTTGTCGGCGTGGAATCC-ATCGGAACTCGGGC-AGATGGTTCTACC 10990667
Query 9335 GCCATGCCATA 9345
||||| ||||
Sbjct 10990666 ACCATGTCATA 10990656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397566221752880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |