Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 174 1e-38 seq1 82.4 6e-11 >seq5 Length=14578851 Score = 174 bits (192), Expect = 1e-38 Identities = 444/673 (66%), Gaps = 2/673 (0%) Strand=Plus/Minus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| | ||| ||||||| ||||||||| ||| | ||| || || ||| || Sbjct 9911126 TGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCTTTTTCGACGCGCTTCATGAA 9911067 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 ||||| || | |||||| || |||| | || || || |||| ||| || ||| Sbjct 9911066 GAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGT 9911007 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || || || | | | ||||| ||||| ||||| |||||||| |||| ||||||||| Sbjct 9911006 GTTCTTTCGAAGAGCAACAAACTCGAAGATATCGGCGTGCCATGGCTCCAAGTAGATGGC 9910947 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 ||| | || |||||| || ||||| || ||||| |||||| |||||| |||| Sbjct 9910946 GAATGCTCCTGGTCGTTTGTTACCTCCTTGATCAACGTAACGAGCGGTGTTGTTGTAGAC 9910887 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 ||| | ||| |||| ||| || || ||| | |||||||| ||| | || || || Sbjct 9910886 ACGAAGCATTGGTATGAGTCCATTGGATGTTCCATTGGTTCCGGCAATCACTGAGCCAGT 9910827 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 ||| || || | ||| ||||| ||||| || || || || ||||||| || ||| || Sbjct 9910826 TGCACGGATCTTGTGCACATTGAGACCGATGCCTCCAGCACTCTTCGAAATCAGAGCGCA 9910767 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | || || | | || ||| ||| ||||| | | || |||| | | |||| Sbjct 9910766 CTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCA 9910707 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 |||| | || || | || | | |||||| || || | || || || | Sbjct 9910706 TGAAGACATCTGTGGACGGCACGTTCCAGAGTTGAAGAGAGTTGGAGAGGCATGTGTCAT 9910647 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | ||||| | ||||||||||| ||| | || ||||| || || || || Sbjct 9910646 GTACCGTTCGGACATCAAGTTGTACGTCTCAATGGCGGCGGAAATGTCTTTTCCGTGGAT 9910587 Query 66826 CCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATAT 66884 || | || ||| |||||||| | | || || | |||||| | | ||||| | Sbjct 9910586 TCCAATGGCGACA-CGCATCAGCATTTGCTGTGGTCTTTCGACGACTTCCTTGTTGATCT 9910528 Query 66885 GCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAG 66944 | | |||||| || || || ||||||| || ||||| | |||| | |||| | Sbjct 9910527 TGAGAAGGTAGGAACGCTCGAGCGTCTTGAATCCGAAGTAGGTGTAAGAGTAATCTCTGT 9910468 Query 66945 CATGCACGATGGC 66957 | | |||||||| Sbjct 9910467 CGTAGACGATGGC 9910455 Score = 118 bits (130), Expect = 8e-22 Identities = 232/336 (69%), Gaps = 14/336 (4%) Strand=Plus/Minus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| ||| || | || || |||| || |||||||| | |||||||| ||||| || Sbjct 11386346 GAACGCTTCTCGAACGAAGTCAAAGTCTCCGAGGCGCGCTTCTTCTACGGATTCCAAATC 11386287 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 ||||| |||||| | ||||||||||||||| |||||||| || |||||| | || Sbjct 11386286 GCCATCGAGAATATTCACTCGGAGATGTACTCAAAGCTCATCGAGACCTACATCCGCGAT 11386227 Query 61378 CGGGCGGAACG--TGAACGATTGTTCAATGCCA---TCGAG-ACGATACCGGCGGTGAAG 61431 | ||| || |||| ||||||| |||| ||||| ||| | | ||| Sbjct 11386226 GAGAAGGAGCGCATGAA--GCTGTTCAACGCCATCTTCGAGTTCGA----GTTCATCAAG 11386173 Query 61432 CGGAAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG 61490 ||| || || ||||| |||| |||||| || || | ||| | || | ||||| Sbjct 11386172 AAGAAGGCCGACTGGGCGCTTC-GTTGGATTTCCGACACCAAGGCCTCGTTCGCCGAACG 11386114 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 || | ||||| || | |||||||| | || || || |||||||| || | || || Sbjct 11386113 GCTGATCGCATTCGCCGCCGTCGAGGGCATCTTCTTTAGCGGATCGTTCGCATCGATTTT 11386054 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 ||| | ||||| || || || ||||| ||| |||| Sbjct 11386053 CTGGCTCAAGAAGCGCGGTCTGATGCCAGGTTTGAC 11386018 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| ||| ||||| ||||| ||||| | |||||| ||||| | ||||||| ||| || Sbjct 9911629 GCAATAGAAGCGAGATTGCAAACAGCAACCTCGTCTGGAGCAGAGTACTCGATAATCTCA 9911570 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||||| || ||| || || ||||| || || || || |||||||||| Sbjct 9911569 GTGCACAAGTTGGAGCACTTGATAGTTCCCAAGTTTTGCTGGTTCGACTTGCGATTGGCG 9911510 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||||||||| | ||||| ||| |||||||| | ||| Sbjct 9911509 GCATCCTTGTAGGTGATGTATGGAAGTCCGGTCTCGATTTG 9911469 >seq1 Length=15455979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 9157 TTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATA 9216 ||||||| ||||| ||| |||||||||| ||| ||| | |||||||||||||| || | Sbjct 10990844 TTTACGGATTCCAATGGAGACATTTCGGAGCTAAATACGTGGATTGTCATACGGATTACA 10990785 Query 9217 CGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA 9276 | || |||||| | |||||| | || || || | || ||| | | || ||| | Sbjct 10990784 CTGGACAAGGTATTGATCAGCTAGCTGAAGTCATTCGACAAATCAAGGAAGAACCGGACA 10990725 Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACG--ATTTGGACAAGATGGTATTGCC 9334 | || | || ||| || | || |||||||| | || | | || | ||||||| | || Sbjct 10990724 GCAGAAGAATCATTTTGTCGGCGTGGAATCC-ATCGGAACTCGGGC-AGATGGTTCTACC 10990667 Query 9335 GCCATGCCATA 9345 ||||| |||| Sbjct 10990666 ACCATGTCATA 10990656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566221752880