Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 2e-12 >seq5 Length=14578851 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 364423 ACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCC 364482 |||||| ||||||||||| |||| | | |||| || ||||||||||| || | || Sbjct 5696688 ACCAATTGTCATACGAGATGGAACTGCGTGAGGATTAATGATGATGTCCGGAGTAAGACC 5696747 Query 364483 GTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 ||||| || || ||||||||||| | || |||| || || || ||||| || | Sbjct 5696748 TTCAGCAGTGAAAGGCATATCTTCCTGGCGATACATGATTCCCATAGTACCCTTCTGTCC 5696807 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| ||||||||||| ||||| Sbjct 5696808 GTGACGAGAGGCAAACTTGTCTCCAAT 5696834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884877536910731