Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 176 7e-42 >seq1 Length=15072434 Score = 176 bits (194), Expect = 7e-42 Identities = 188/240 (78%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||| ||| | Sbjct 15063670 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGCATT-C 15063613 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||| |||| |||| ||||||| || | |||||||| | || Sbjct 15063612 CTCGTTTAAGGGCAATAATTACAATACCCTATCCCGGACATGGAAGAATTTCAACGGTTT 15063553 Query 121 CCCGG-ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| ||| | | || || ||| | || ||||||||| ||||||| Sbjct 15063552 ACCGATACCTTTCGGCATAGG--AAAAACCCGCTGACTCCACCAGTGTAGCACGCGTGCA 15063495 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 15063494 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 15063438 Score = 176 bits (194), Expect = 7e-42 Identities = 188/240 (78%), Gaps = 9/240 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||| ||| | Sbjct 15070867 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGCATT-C 15070810 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||| |||| |||| ||||||| || | |||||||| | || Sbjct 15070809 CTCGTTTAAGGGCAATAATTACAATACCCTATCCCGGACATGGAAGAATTTCAACGGTTT 15070750 Query 121 CCCGG-ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| ||||| ||| | | || || ||| | || ||||||||| ||||||| Sbjct 15070749 ACCGATACCTTTCGGCATAGG--AAAAACCCGCTGACTCCACCAGTGTAGCACGCGTGCA 15070692 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 15070691 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 15070635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999949005