Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-30 >seq1 Length=15072434 Score = 138 bits (152), Expect = 2e-30 Identities = 192/257 (75%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| | ||||| ||||| |||| |||||| |||| || || ||||| ||||| | Sbjct 15062784 GCCAGCAGGTTTACCTTGAATAAATCAGAGTGCTCAATACAAGCGCTTGCTTGAATAGCT 15062843 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | ||||||||||| || ||||| | ||||||| ||||||||| |||||| || | | Sbjct 15062844 CATCATGGAATAATGAAACAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTT 15062900 Query 185 AATGATTAATAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTT 242 |||| |||| ||||| | |||||| | ||| ||| | | ||||||||||||| | Sbjct 15062901 AATGGTTAAGAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGT 15062959 Query 243 GGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| || || |||| | || |||||||| || ||||| |||| ||||||||||| Sbjct 15062960 GGACCGTAGTG-AGACGCCCAACAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA- 15063017 Query 302 TGAACGAAAGTTAGGGG 318 |||||||||| || || Sbjct 15063018 AGAACGAAAGTCAGAGG 15063034 Score = 138 bits (152), Expect = 2e-30 Identities = 192/257 (75%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| | ||||| ||||| |||| |||||| |||| || || ||||| ||||| | Sbjct 15069981 GCCAGCAGGTTTACCTTGAATAAATCAGAGTGCTCAATACAAGCGCTTGCTTGAATAGCT 15070040 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | ||||||||||| || ||||| | ||||||| ||||||||| |||||| || | | Sbjct 15070041 CATCATGGAATAATGAAACAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTT 15070097 Query 185 AATGATTAATAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTT 242 |||| |||| ||||| | |||||| | ||| ||| | | ||||||||||||| | Sbjct 15070098 AATGGTTAAGAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGT 15070156 Query 243 GGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| || || |||| | || |||||||| || ||||| |||| ||||||||||| Sbjct 15070157 GGACCGTAGTG-AGACGCCCAACAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA- 15070214 Query 302 TGAACGAAAGTTAGGGG 318 |||||||||| || || Sbjct 15070215 AGAACGAAAGTCAGAGG 15070231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199935936