Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 205 2e-50 >seq1 Length=15072434 Score = 205 bits (226), Expect = 2e-50 Identities = 203/258 (79%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 15063416 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 15063473 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||| ||||||||| ||| || || ||| || Sbjct 15063474 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGGTGGAGTCAGCGGGTTTTTC- 15063532 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||| ||||| | ||||| | | ||| ||| | || ||||||| | |||| Sbjct 15063533 -CTATGCCGAAAGGTATCGGTAAACCGTTGAAATTCTTCCATGTCCGGGATAGGGTATTG 15063591 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| ||| |||||||||||||||||||| | | ||||||||| | |||||||| Sbjct 15063592 TAATTATTGCCCTTAAACGAGGAATGCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 15063651 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 15063652 ACGTCCCTGCCCTTTGTA 15063669 Score = 205 bits (226), Expect = 2e-50 Identities = 203/258 (79%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | ||| | ||||| || | ||||| | |||||||||||||| Sbjct 15070613 CTTCTTAGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTG 15070670 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||| ||||||||| ||| || || ||| || Sbjct 15070671 ATGCCCTTAGATGTCCGGGGCTGCACGCGTGCTACACTGGTGGAGTCAGCGGGTTTTTC- 15070729 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||| ||||| | ||||| | | ||| ||| | || ||||||| | |||| Sbjct 15070730 -CTATGCCGAAAGGTATCGGTAAACCGTTGAAATTCTTCCATGTCCGGGATAGGGTATTG 15070788 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| ||| |||||||||||||||||||| | | ||||||||| | |||||||| Sbjct 15070789 TAATTATTGCCCTTAAACGAGGAATGCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 15070848 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 15070849 ACGTCCCTGCCCTTTGTA 15070866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199933696