Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 482 8e-134 >seq1 Length=15072434 Score = 482 bits (534), Expect = 8e-134 Identities = 426/525 (81%), Gaps = 14/525 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 15067647 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 15067588 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || | | || Sbjct 15067587 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTC 15067528 Query 127 G----GCCCGCGAAGGAC----CTTAACGCCA-GAAAATGGTCGGTGAAGACCAGTTC-C 176 ||| || | | ||||| || ||||| | | |||||| ||| ||| | Sbjct 15067527 ACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAG-CCAATTCTC 15067469 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACG 235 || | || |||||||| | |||| | || ||||||||||||| || ||||| | Sbjct 15067468 TTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACTGTCGTCCGAA--G 15067411 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||| ||| |||||||||||| | | ||||||| ||| |||||||||||||||| Sbjct 15067410 ACTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCA 15067351 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 15067350 ACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 15067291 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 15067290 GAAAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAAT 15067231 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15067230 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTA 15067171 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| || | ||| |||||||||||||||||||||||||| Sbjct 15067170 CTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCA 15067126 Score = 104 bits (114), Expect = 8e-20 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| | ||||||||||||| ||||| | Sbjct 15060451 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACG 15060392 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| | |||||| ||||||||| |||||||||| | ||||| |||| || Sbjct 15060391 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCTTGACACTGTCTTC 15060342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199885536