Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1 163 9e-38 >seq1 Length=15072434 Score = 163 bits (180), Expect = 9e-38 Identities = 122/142 (86%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 15062507 TGGATAAGTTTCGCGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTTTCTAAGGCTCCCTC 15062448 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||| ||||||||| |||| ||||||||||| |||||||||| ||| || |||| Sbjct 15062447 TCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAACAACCATGGTAGTCCAATAAACTAC 15062388 Query 195 CATCGAAAGTTGATAGGGCAGA 216 |||| |||||| |||||||| Sbjct 15062387 CATC--TAGTTGAAAGGGCAGA 15062368 Score = 163 bits (180), Expect = 9e-38 Identities = 122/142 (86%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 15069704 TGGATAAGTTTCGCGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTTTCTAAGGCTCCCTC 15069645 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||| ||||||||| |||| ||||||||||| |||||||||| ||| || |||| Sbjct 15069644 TCCGGAGTCGAACCCTTATTCTCCGTTACCCGTAACAACCATGGTAGTCCAATAAACTAC 15069585 Query 195 CATCGAAAGTTGATAGGGCAGA 216 |||| |||||| |||||||| Sbjct 15069584 CATC--TAGTTGAAAGGGCAGA 15069565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399894272