Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq1 89.7 4e-13 >seq3 Length=13783801 Score = 113 bits (124), Expect = 4e-20 Identities = 302/462 (65%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || | ||||| |||| | |||||| | | ||||||||| || || Sbjct 9225611 ATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACATTCCAGT 9225670 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||| || ||| | ||||||||||| |||| | || || | |||| Sbjct 9225671 CTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCTTGGCTT 9225730 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||||| || || || | || || ||||| ||||| |||||||| |||||||| Sbjct 9225731 GGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGCAGCCAT 9225790 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 ||||| || | || |||||||| || || || || | || Sbjct 9225791 CTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGATGTCGGA 9225850 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 |||||| | ||||||| || | || ||| ||||| | ||||| |||| Sbjct 9225851 TGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCTTCATCTC 9225910 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || | |||||| || || | | || | | || |||| |||| | | ||||| Sbjct 9225911 ATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAATCTGGAA 9225970 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || || || ||||| || |||||||| || ||| || || | ||||||| | Sbjct 9225971 ATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGGATTCATT 9226030 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 ||| || |||||||| ||||| || ||||||||||| ||||| Sbjct 9226031 GTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGC 9226072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| || || |||||||| || || ||||| || ||||| | ||||| | ||| Sbjct 9226566 AGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCTGGAGCAGAGTACTCTATGATT 9226625 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||||| || || || || || | ||| || || ||| |||||||||| Sbjct 9226626 TCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTTTGCTGGTTAGACTTGCGATTG 9226685 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 ||||| ||||| | ||||| ||| |||||||| | |||| || |||| Sbjct 9226686 GCGGCATCTTTGTAGGTGATGTATGGAAGCCCGGTCTCGATTTGGTTGGAAACGATGTGC 9226745 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGT 66210 | ||| || ||| ||||||||||| Sbjct 9226746 TCCCAGAGCTTGCGGGCCTTCACCGT 9226771 >seq1 Length=15072434 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 9157 TTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACGGACTATA 9216 |||| || || || ||| |||| || || || || | ||||||||||| || || Sbjct 5138711 TTTATGGATTTCAATGGAGACACTTTGGGGCGAAATATGTGGATTGTCATACAGATTACT 5138770 Query 9217 CGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATATGAGCCGAGTA 9276 | || |||||||| ||||||||||| || ||| | ||||| | | | ||| || Sbjct 5138771 CTGGACAAGGTGTTGATCAGTTGGCTGAAGTTATCCGACAGATTAAGGAGCAACCGGATA 5138830 Query 9277 GTCGACGCATGATTATGACTGCCTGGAATCCGAACGAT-TTGGACAAGATGGTATTGCCG 9335 ||||| | || |||||| | || ||||||||| ||| |||||||| ||||| |||| Sbjct 5138831 GTCGAAGAATCATTATGTCCGCGTGGAATCCGTCGGATCTTGGACAA-ATGGTTCTGCCA 5138889 Query 9336 CCATGCCA 9343 || || || Sbjct 5138890 CCGTGTCA 5138897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567966082480