Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 2e-12 >seq3 Length=13783801 Score = 89.7 bits (98), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 364423 ACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCATGCC 364482 |||||| ||||||||||| |||| || |||| || |||||||| ||||| | || Sbjct 4943048 ACCAATTGTCATACGAGATGGAACGGCATGAGGATTAATGATGATATCAGGAGTGAGTCC 4942989 Query 364483 GTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGTTCCCTTTTGCGC 364542 ||||| ||||| ||||||||||| | || || | ||| |||||||| ||||| | Sbjct 4942988 TTCAGCAGTAAATGGCATATCTTCTTGCCGATACATAATACCCATGGTTCCTTTTTGACC 4942929 Query 364543 ATAGCGAGAAGCAAACTTGTCGCCAAT 364569 | ||||| || || || || ||||| Sbjct 4942928 GTGTCGAGATGCGAATTTATCTCCAAT 4942902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884886230949251