Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq8043 372 5e-101 >seq8043 Length=1654 Score = 372 bits (412), Expect = 5e-101 Identities = 247/274 (90%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| |||||||||| |||||| ||||||| ||| || ||||| ||||| Sbjct 874 GAGGGGGGCTTCACGCTTAGATGCTTTCAGCGTTTATCCCGTCCGTACATAGCTACCCAG 933 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| | |||| | ||||||||| |||||| ||| |||||||||||||||||||||| Sbjct 934 CGGTGCTCCTGGCGGAACAACTGGTACACCAGCGGTACGTCCATCCCGGTCCTCTCGTAC 993 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 994 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACAGATAGGGACCGAACTGTCTCAC 1053 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1054 GACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 1113 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||| || |||||||||||| Sbjct 1114 TACTTCAGCCCCAGGATGCGATGAGCCGACATCG 1147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780657668212