Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18085 154 1e-32 seq17418 122 7e-23 seq17432 118 8e-22 >seq18085 Length=168442 Score = 154 bits (170), Expect = 1e-32 Identities = 428/650 (66%), Gaps = 10/650 (2%) Strand=Plus/Plus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| | || ||||||| |||||||| ||||| ||| ||||| ||| || Sbjct 29874 TGGGCACTCGCACGGGCACATCAAAGACCAATCCTGATCCTTTTCGACACGTTTCATGAA 29933 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GT 66404 | ||| || | |||||| || || ||||| || || || | ||| || || || Sbjct 29934 CAAATCTGGCACCCAGAGTGCCAGAAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGT 29993 Query 66405 GATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | |||||||| | | ||||| || || ||||| ||||| || ||||||||||||| Sbjct 29994 G-TTTTTGCGGAGTGAAACAAACTCGAAAATATCGGCGTGCCACGGCTCCAGGTAGATGG 30052 Query 66465 CGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGA 66524 |||||| ||| || ||| |||||| || |||||||| ||||| |||||| ||| Sbjct 30053 CGAACGCTCCCGGGCGCTTGTTGCCACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGA 30112 Query 66525 CACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTC 66584 | || | |||||| | || ||||| || | || |||||||| | || ||||| Sbjct 30113 CGCGAAGCATCGGAATCAGTCCGTTCGACGTTCCGTTGGTGCCAGCAATCACCGATCCGG 30172 Query 66585 GTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCAC 66644 || || || | ||| || || ||||| || ||||| || ||||||| || || | Sbjct 30173 TGGCACGAATCTTGTGCACGTTGAGACCGATTCCACCTGCGCTCTTCGATATAAGGGCGC 30232 Query 66645 AATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGC 66704 | | | || | || || ||| |||||| | | || || || ||| ||| Sbjct 30233 ATTGTTTTAGCGTGTCATAGATTCCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGC 30292 Query 66705 ATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAA 66764 | || | ||| || | ||| | | ||| || || || | |||||||| | Sbjct 30293 ACGACGACATTTGTGGCCGGCATGTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCA 30352 Query 66765 AGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAA 66824 | | | ||||| |||||||||| |||||| | | | | || | ||| || || | Sbjct 30353 TGAACCGTTCCGACATCAAATTGTACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTA 30412 Query 66825 TCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTG--- 66880 | |||| || ||| ||||||| | | ||||| |||||||| | | |||||| Sbjct 30413 TTCCGATGGCGACA-CGCATCAACATCTGCTGAGGACGTTCGACAATC---TCCTTGTTT 30468 Query 66881 ATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTA 66930 || | | | |||||| || || || || |||| || ||| | | ||| Sbjct 30469 ATCTTGAGAAGGTAGGAACGCTCAAGCGTTTTGAAGCCGAAGAAGGTGTA 30518 >seq17418 Length=39954 Score = 122 bits (134), Expect = 7e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 |||||| | |||| || || | |||||||||||||| || || || || |||| ||| Sbjct 604 GAGATTATCAGTGACGCAGTCAAGATCGAACAGGAATTCCTTACCGAAGCGCTGCCAGTC 545 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | || || ||||| ||| | || ||||| ||||| ||||| ||||| ||||| | | Sbjct 544 GACATGATTGGAATGAACTGTCGTCTCATGTCCCAGTACATTGAGTTTGTCGCCGATCAT 485 Query 61813 CTG-TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| ||| | | | || | |||| | | || || | |||||| || || || ||||| Sbjct 484 CTGCTTGTTGAACTCGGATGTGAA-AAGCTGTACAAGAAGAAAAATCCGTTCGACTTCAT 426 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || ||| | ||||| ||||| || ||||||||||| || || || ||||| Sbjct 425 GGAGAATATCTCGATTGATGGAAAGACAAACTTTTTCGAGAAGCGCGTTTCGGAGTATCA 366 Query 61932 ACGT 61935 ||| Sbjct 365 GCGT 362 Score = 100 bits (110), Expect = 2e-16 Identities = 341/536 (64%), Gaps = 54/536 (10%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||||||| | ||| || ||||||||||| ||||| |||||| || |||||| ||| Sbjct 1281 TACAAAAAGGCAGTAGCGTCATTCTGGACGGTCGAGGAAGTCGATCTGGGCAAAGATATG 1222 Query 61159 AATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTT 61217 ||||| |||||| | | | | | | ||| ||| | || || || || | || || Sbjct 1221 AATGATTGGGAGAAGATGAATG-GTGATGAGCAATACTTTATCTCACGAGTTCTCGCCTT 1163 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT------------------------- 61252 || || ||||| || || |||||||||||||||| Sbjct 1162 TTTCGCTGCTTCCGATGGAATCGTCAATGAGAATTTGGTAAATACGACTTAAAATTTTCA 1103 Query 61253 ---------TATTG--------GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCG 61295 ||||| || || ||| || | || ||| |||| || ||||| || Sbjct 1102 GTTTAAAAGTATTGTTCAGTGTGAGCGCTTCTCGAACGAAGTGAAAGTATCAGAGGCCCG 1043 Query 61296 TTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCT 61355 | ||||| || ||||| || ||||| |||||| | |||||||| |||||| || Sbjct 1042 ATTCTTCTATGGATTCCAAATCGCCATCGAGAATATTCACTCGGAAATGTACTCGAAGCT 983 Query 61356 CATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCA---TCGA 61412 |||||| |||||||| | || | || ||| | | || | || || | |||| Sbjct 982 CATCGAGACGTACATTCGAGACGAAACAGAGCGTCACACACTGCTTAACGCAATTTTCGA 923 Query 61413 GACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACA-- 61470 | | | | ||| ||| || || ||||| || |||||| | | ||| Sbjct 922 ---GTTTGAGTTCATCAAGAAGAAGGCCGACTGGGCTCTCCGTTGGATTTC--GGACAAG 868 Query 61471 ACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGT 61530 | || |||||| || || | | || || || | ||||| || | ||||| ||| Sbjct 867 AAAGCGTCATTTGCCGAGAGACTTATCGCGTTCGCTGCTGTCGAAGGAATCTTTTTTAGT 808 Query 61531 GGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 ||||| || ||| | || |||||| | || || ||||| || ||||| || || || Sbjct 807 GGATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGTGGGCTCATGCCAGGGCTCAC 752 >seq17432 Length=65892 Score = 118 bits (130), Expect = 8e-22 Identities = 147/196 (75%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9150 GGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCATACG 9209 ||||| ||||||| || |||||| ||||||||||||| ||| | |||||||| || Sbjct 6142 GGCCCGGTTTACGGATTTCAGTGGAGACATTTCGGTGCGAAATACGTGGATTGTCACACC 6083 Query 9210 GACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGTA-TGCATCAGATCCAATATGA 9268 ||||| || || || ||||| ||||||||||| | | ||| | | || ||| | | || Sbjct 6082 GACTACACCGGTCAGGGTGTCGATCAGTTGGC-CGAGGTAATCCGGCAAATCAAGGAGGA 6024 Query 9269 GCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGAT-TTGGACAAGATGG 9327 ||| ||||||||||| ||| || |||| |||||| || ||| || | ||| |||| Sbjct 6023 TCCGGACAGTCGACGCATTATTTTGTCTGCGTGGAATGCGGCGGATCTTCGGCAA-ATGG 5965 Query 9328 TATTGCCGCCATGCCA 9343 | ||||| || ||||| Sbjct 5964 TGTTGCCACCGTGCCA 5949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397476824860880