Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq9540 154 4e-33 >seq9540 Length=1145 Score = 154 bits (170), Expect = 4e-33 Identities = 177/237 (75%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 25247 ACCGCCGGCTTTGTCGATGACCCCGGCCAGAACTTCCTGCGCCGCCAGGGTCGCATCACC 25306 || |||||||| || || || || |||||||||| |||||| | | || |||| ||| Sbjct 897 ACTGCCGGCTTCGTTGACGATCCGGGCCAGAACTACCTGCGTCAGCTCGGCCGCAAGACC 956 Query 25307 GG---CGCGGACAACTTCATCGAGGCGCGAATCTACCGCCGCGACGAGCTGCCCGACGCG 25363 || |||| |||| | | |||| || |||||||||||||| || ||||||||||| Sbjct 957 GGACTCGCGAACAAGGTGA---AGGCCCGCATCTACCGCCGCGATGACCTGCCCGACGCA 1013 Query 25364 TACCAGTCGACGAACATCGTGAAGTGGACCGACACCGCCGCAGGCGATCCGAACGCACTC 25423 |||||| ||| || ||||||||||| ||| | | ||| ||||||||||| | Sbjct 1014 TACCAGGGCACGCACCCGGTGAAGTGGACTGACTCGCCTGCATCGGATCCGAACGCGTTG 1073 Query 25424 CAGGAGTTCAGCTTCACTCTCGGCGGCGTCGGTAAGCCGGAGGAGATCGTCAAGCCG 25480 ||||||||||| ||||| ||||| || || |||||||| |||||| |||||| Sbjct 1074 CAGGAGTTCAGTTTCACCCTCGGATTCGGTGGGAAGCCGGAAGAGATCACGAAGCCG 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126167001445944