Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq254 159 8e-37 >seq254 Length=7782 Score = 159 bits (176), Expect = 8e-37 Identities = 175/232 (75%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212 || ||||||||||| || ||| ||||||||||| ||| || ||||||| ||||| Sbjct 5135 ACATCCAGCATGCGGGCGGTGTTTTCGGCGCGCTCGGTGTAGCGGCACATCCAGAACAGA 5194 Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCA---CCCAGGTGTCCTTGGTTC 269 | |||| |||| | |||||| |||| ||||| ||| |||||||||||||||| | Sbjct 5195 TTGTCAGCGGTTCGGCTCAGCATGTTCAGTCCTCCTCCAGCACCCAGGTGTCCTTGGTGC 5254 Query 270 CACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGC 329 | ||||| || |||||| ||||||||||| || |||||||||||||| || || Sbjct 5255 CGCCGCCCTGGCTGCTGTTGACCACCAGCGAGCCCTCGGTCAGCGCCACGCGGCACAGGC 5314 Query 330 CACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTC 381 | || ||||| |||| | |||||||| | |||||| |||| |||| ||| Sbjct 5315 CGCCCGGCACGGTGCGGATGTCCTTGCCGCACAGCACGTAGGGGCGCAGGTC 5366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119963611200