Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 >seq3 Length=15630833 Score = 174 bits (192), Expect = 1e-38 Identities = 444/673 (66%), Gaps = 2/673 (0%) Strand=Plus/Minus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| | ||| ||||||| ||||||||| ||| | ||| ||||| ||| || Sbjct 10143243 TGGGCACTCGCATGGGCACATCAACGACCAATCTTGATCTTTTTCGACACGTTTCATGAA 10143184 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 ||||| || | |||||| || |||| | || || || |||| ||| || ||| Sbjct 10143183 GAGATCTGGCACCCAGAGAGCCAAGAACAAGTCACGAGCACGTTCCTCTTCTGGTCCGGT 10143124 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 || || || | | | ||||| |||||||||||||||||||| |||| ||||||||| Sbjct 10143123 GTTCTTTCGAAGAGCAACAAACTCGAAGATGTCGGCATGCCATGGCTCCAAGTAGATGGC 10143064 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 ||| | || || ||| ||| ||||| || ||||| ||||| |||||| |||| Sbjct 10143063 GAATGCTCCTGGTCGCTTGTTGCCTCCTTGATCAACGTAACGAGCAGTGTTGTTGTAGAC 10143004 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 ||| | ||| |||| ||| || || ||| | || ||||| ||| | || || || Sbjct 10143003 ACGAAGCATTGGTATGAGTCCATTGGATGTTCCGTTGGTTCCGGCAATCACTGAACCAGT 10142944 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 ||| || || | ||| ||||| ||||| || || ||||| |||| ||||| ||| || Sbjct 10142943 TGCACGGATCTTGTGCACATTGAGACCGATTCCTCCGGCACTCTTTGAGATCAGAGCGCA 10142884 Query 66646 ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | || || | | || ||| ||| ||||| | | || |||| | | |||| Sbjct 10142883 CTGCTTCAAAGTGTCGTAGATTCCGAGAATCGAGTCCTCGCTCATCGTCAACAAGAAGCA 10142824 Query 66706 TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 |||| | || || | ||| | | ||| || || || | ||| || || | Sbjct 10142823 TGAAGACATCTGTGGACGGCATGTTCCAGAGTTGAAAAGAGTTGGCGAAGCATGTGTCAT 10142764 Query 66766 GTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAAT 66825 ||| | ||||| | ||||||||||| || | || |||||| | || || || Sbjct 10142763 GTACCGCTCCGACATCAAGTTGTACGTCTCAATCGCCGCGGCAATGTCGTTTCCGTGGAT 10142704 Query 66826 CCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATAT 66884 || | || ||| ||||||| | | || || | ||||| | | ||||| | Sbjct 10142703 TCCAATGGCGACA-CGCATCAACATCTGCTGTGGTCTCTCGACGACTTCCTTGTTGATCT 10142645 Query 66885 GCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAG 66944 | | ||| || || || || ||||||| |||||||| | |||| | |||| | Sbjct 10142644 TGAGAAGGTAAGAACGCTCGAGCGTCTTGAATCCAAAGTAGGTGTAAGAGTAATCTCTGT 10142585 Query 66945 CATGCACGATGGC 66957 | | |||||||| Sbjct 10142584 CGTAGACGATGGC 10142572 Score = 120 bits (132), Expect = 2e-22 Identities = 312/468 (67%), Gaps = 12/468 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 |||||| |||||||| | ||||| |||| | |||||| | | |||||||| || || Sbjct 10144704 ATCGACAGTGAACTGAACGGCATTGACAGCTGGCTTGGTACGCAAGTAGTACATTCCAGT 10144645 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||| || ||| | ||||| ||||| || | | || || | |||| Sbjct 10144644 CTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGAGGTGATGGCGGCGTAGCTTGGCTT 10144585 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 ||||| || || || | ||| || ||||||||| | |||||||| |||||||| Sbjct 10144584 GGCCATGTGGATGTTGAGCGATTGGGATTGATCGATGAATGCTCCACGATCGGCAGCCAT 10144525 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGC----GACGTACC 65311 || || || | | || || ||||||||||| || ||| || || || | Sbjct 10144524 CTCGATAAT-CTCCTTCTGTGAGATCTCCCAGACAGTGAGGTAAAGTTCCTTGATGT-CG 10144467 Query 65312 TCAATTGGAATCTCCTC-AATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACG 65370 || |||||| |||| ||| | |||| || ||| || || | ||||| Sbjct 10144466 TC---TGGAAT-TCCTGGAATATTTTGGATGGATCCATTGTTGGCGATGAGACGATTCTT 10144411 Query 65371 CATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGAC 65430 ||| || |||||||| || || | |||| | | || ||| |||||| || Sbjct 10144410 CATGTCATCGGACCACAATCCTCTCTCAACCAGATCCTTCAGCATGTGTGGATTGACGAT 10144351 Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||| || ||||| || |||||||| |||||||| || ||| || |||| || Sbjct 10144350 TTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTAGAAGTGTATGGCTCAATCGA 10144291 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 ||| |||| || || || || ||||| || ||||||||||| ||||| Sbjct 10144290 TTCGTTGTTTCCAAGGATCTGAGCAGTGGAAGCAGTTGGCATTGGAGC 10144243 Score = 102 bits (112), Expect = 6e-17 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||||||| ||||| ||||| | ||| || ||||| | ||||||| ||| || Sbjct 10143746 GCAATGGATGCGAGATTGCAAACAGCAACCTCATCTGGAGCAGAGTACTCGATAATCTCC 10143687 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||||| || ||| ||||| ||||| ||||| || || |||||||||| Sbjct 10143686 GTGCACAAGTTGGAGCACTTGATGGTTCCCAAGTTCTGCTGGTTCGACTTGCGATTGGCG 10143627 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG---GGACTCAATGATGGCG 66184 ||||||||||| | ||||| ||| || ||||| | ||| ||| ||||| || Sbjct 10143626 GCATCCTTGTAGGTGATGTATGGAAGTCCAGTCTCGATTTGATTGGAGACAATG-TG--C 10143570 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGT 66210 | |||||| ||| |||||||| || Sbjct 10143569 TCCCAAAGCTTGCGAGCCTTCACTGT 10143544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552257425360