Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20nigoni_20[genbank_20GCA_5F001643685.1_202016-05-13] 3,249 sequences; 137,395,604 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq2863 336 7e-88 seq3052 192 2e-44 seq1738 163 9e-36 >seq2863 Length=6135 Score = 336 bits (372), Expect = 7e-88 Identities = 668/981 (68%), Gaps = 20/981 (2%) Strand=Plus/Plus Query 1958 TTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCG 2017 |||||||||||||||| || || || | ||||| || || ||||||||||| ||| | | Sbjct 4680 TTGACGGTACTCCAAATAAGGGAAATTTAGGTGCAAATGCAATTCTTGGTGTTTCTTTAG 4739 Query 2018 CTGTAGC--ACGC-GCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCG 2074 |||| || | || || || ||||| | | || | || ||||| | || | || | Sbjct 4740 CTGTTGCTAAAGCTGCGGCCGCTGAAT---TAAAAATGCCTCTTTATAAATATGTAGGTG 4796 Query 2075 GATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACT 2134 | | || | || | || ||| ||||||||| | |||||||| |||||||||| Sbjct 4797 GTGTTAATGCCAATACATTACCTGTTCCGATGATGAACGTTATCAACGGAGGTTCTCACT 4856 Query 2135 CAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCA 2194 |||| ||||| ||||| ||||| ||||||||| | | || | || ||| | ||| Sbjct 4857 CAGATGCTCCTATCGCATTCCAGGAATTTATGGTAATGCCGGTTGAAGCAGATTCTTTCT 4916 Query 2195 AAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAAC 2254 | || | | || |||| || |||||| ||||| || || |||| | Sbjct 4917 CTCATGCCTTAAGAAAAGGAACTGAGATTTTCCACAGTCTTAAATCTATTCTGAAAGGAA 4976 Query 2255 GTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTG 2314 | ||| |||||| |||||||| |||||||||||||| ||| ||| | ||||||| Sbjct 4977 GAAACCTTTCAACAGCAGTAGGTGATGAAGGTGGTTTCGCTCCTACATTCAATGGAACTG 5036 Query 2315 AAGATGGTGTTGAAACTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAG 2374 | |||||| | || ||| | | | || || ||| || |||||| || ||| || Sbjct 5037 AGGATGGTTTGGATACTTTACTTCAGGCAATTGAAAAAGCAGGATATAAGCCGGGTGTAG 5096 Query 2375 ACGTATTTATCGGACTTGACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTT 2434 | | | | | | | |||||||| || |||||||||||| | | ||| || || Sbjct 5097 ATATTATGTTAGCATTAGACTGTGCTTCTTCTGAATTCTACAAAG----ACGGAATGT-- 5150 Query 2435 ACGACTACACTAAATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCG 2494 |||| |||| || ||||| || ||| | || | || || |||||| | Sbjct 5151 ACGATTACAGAAAGTTTGAGGGAGAAAAAGGGGCGCACAGAACACGTGAAGAACAGGTAT 5210 Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 || |||| ||| || ||| ||||| || || ||| ||||||||||||||||| | | Sbjct 5211 CTTATCTTGCAGAGTTATGTAATAAATATCCGATTATCTCTATCGAAGATGGTATGCAGG 5270 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGG 2614 || | |||||||| ||||||||| |||||||| | || | | ||| ||||| | Sbjct 5271 AAGATGACTGGGAAGGTTGGAAAATGCTTACTGATAAAATCGGAGACAGAGTACAATTAG 5330 Query 2615 TTGGTGACGACTTCTTCGTAACTAAC--ACTGCTTACCTTGAAAAAGGTATTGCAGAACA 2672 | || || ||| | |||||||| || | || | || ||||||| || | ||| Sbjct 5331 TAGGGGATGACCTTTTCGTAACGAATGTAAAGCGT--CTGAAAAAAGGAATCGACGAAGG 5388 Query 2673 CGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGA 2732 ||| ||||| |||||| | ||||| ||||| || ||| || | |||||||| | | Sbjct 5389 TATTGCAAACTCTATCCTTGTAAAAGTAAACCAGATTGGTTCTCTTTCTGAAACTATGGC 5448 Query 2733 CGCTATCGAAATGGCG--AAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGT 2790 ||| | ||||||| ||| || | | || ||| ||||| | || |||||||| || Sbjct 5449 AGCTGTACAAATGGCACAAAACAACC--GTTATACAACAGTAATGTCTCACCGTTCCGGA 5506 Query 2791 GAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAG 2850 |||||||||||| | || || || ||| | || || ||| ||| ||| |||||||| Sbjct 5507 GAAACTGAAGATGCTACTATTGCAGATTTAGCTGTAGCACAAAACTGTGGACAAATTAAA 5566 Query 2851 ACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAA 2910 ||||| || |||||| | ||| | || || || ||||||||| | ||| | || ||| Sbjct 5567 ACAGGATCTGCTTCACGTTCAGACAGAATGGCGAAGTACAACCAACTTCTTAGAATTGAA 5626 Query 2911 GACCAACTTGGTGAAGTTGCA 2931 || ||||| ||| |||| Sbjct 5627 GAAGCTCTTGGAGAAACTGCA 5647 >seq3052 Length=4396 Score = 192 bits (212), Expect = 2e-44 Identities = 283/401 (71%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 || || ||| ||||||||||||||||||||| ||| |||||||||| |||||||| | Sbjct 4178 TATCCTATCGTCACTATCGAAGATGGTATGGCTGAAGACGACTGGGAAGGTTGGAAGTAC 4119 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | | |||| | || ||| | |||||||||||| | |||| || || Sbjct 4118 CTGACCGATCTTATTGGCGACAAGTGCCAACTCGTTGGTGACGACCTGTTCGCCACCAAT 4059 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700 | ||| || | |||||| || ||| ||||| || || |||| || Sbjct 4058 TCCGCTCGTCTCCGTGACGGTATTCGTATGGGCGTTGCCAACTCGATTCTCGTCAAGGTC 3999 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| ||||| | || ||||||| | ||||| |||||| ||| | | ||||| Sbjct 3998 AACCAGATCGGATCGCTGTCTGAAACGCTCGACGCGGTCGAAACGGCTCATAAGGCTGGC 3939 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 || || || || | || || ||||| |||||||| || ||||| || || || ||| | Sbjct 3938 TATACTGCCGTCATGTCGCATCGTTCGGGTGAAACCGAGGATTCGACGATTGCCGATCTC 3879 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || ||||| || ||| |||||| || ||||| || || || | ||| | ||||||| Sbjct 3878 GCGGTTGCTACCAACTGTGGTCAGATCAAGACTGGCTCGCTGGCCCGTTCGGACCGTACG 3819 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 || || |||||||| || | |||||||| || ||||||| Sbjct 3818 GCCAAGTACAACCAGCTGATCCGTATCGAGGAAGAACTTGG 3778 >seq1738 Length=10920 Score = 163 bits (180), Expect = 9e-36 Identities = 279/402 (69%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||||||| | | || ||||| || |||| ||| |||| ||||| || ||||| | | Sbjct 2975 TACCCAATCGTTTCGATTGAAGACGGCATGGCTGAAGACGATTGGGAAGGCTGGAAGTAT 3034 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | |||| || || | ||||| ||||| | |||||||| ||| Sbjct 3035 CTGACCGACCTGATTGGCAAGAAGTGCCAGCTCGTTGGCGACGATCTGTTCGTAACGAAC 3094 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGT 2699 | ||| || | ||||| ||| || ||| ||||| ||||| |||| || Sbjct 3095 TCGGCTCGTCTGCGCGATGGTATCA-AGATGGGCGTTGCCAACTCGATCCTCGTCAAGGT 3153 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| |||||| | | | ||||| | || || |||||| || | | ||||| Sbjct 3154 CAACCAGATCGGTTCGCTCAGCGAAACGCTGGATGCCGTCGAAACCGCACACAAGGCTGG 3213 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| | || | || |||||||| |||||||| |||||||| || || || ||| | Sbjct 3214 TTACACCTCGGTCATGTCGCACCGTTCGGGTGAAACCGAAGATTCGACCATTGCCGATCT 3273 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 ||||||||||| ||| ||||| || ||||| || || || | ||| | ||||||| Sbjct 3274 CGCAGTTGCAACCAACTGCGGTCAGATCAAGACCGGCTCGCTGGCTCGTTCAGACCGTAC 3333 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 ||| || |||||||| | | || |||||||| ||||||| Sbjct 3334 TGCAAAGTACAACCAGCTCATCCGCATCGAAGAAGAACTTGG 3375 Score = 145 bits (160), Expect = 2e-30 Identities = 251/363 (69%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 1937 TTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACG 1996 |||||| || |||| | ||||| || || |||||||| || || || ||||| |||| Sbjct 2409 TTGACCAGGCTCTGATTGAACTTGATGGCACGCCAAACAAGGGCAATCTCGGTGCAAACG 2468 Query 1997 CTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT--ACCTTGAAGTTCC 2054 | ||||| || || || | ||||| || || ||||| | | ||| | | || Sbjct 2469 CAATTCTCGGCGTTTCGCTTGCTGTTGCCAAGGCTGCTGCACAGTCGACC--GGCCTGCC 2526 Query 2055 ACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAACAT 2114 ||||| | ||| ||||||| ||| | | ||||| ||| ||||||||||||||| Sbjct 2527 GCTTTATCGTTACGTTGGCGGTGCTAACGCCCATGTTCTGCCAGTTCCAATGATGAACAT 2586 Query 2115 CATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTACC 2174 |||||| ||||| |||| | ||| |||||||| ||||| ||||| ||||| | || Sbjct 2587 CATCAATGGTGGCGCTCATGCCGACAATCCAATCGACTTCCAGGAATTCATGATCCTGCC 2646 Query 2175 TGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCACGCGCT 2234 | |||||| ||| | | ||||| |||||| || || ||| | |||||| |||| Sbjct 2647 AGTTGGTGCTCCATCGCTGCGCGAAGCTGTTCGTTATGGCGCGGAAGTTTTCCACACGCT 2706 Query 2235 TAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGGTTTCGC 2294 ||||| || ||||| ||| | | || || ||||| ||||| ||||| || Sbjct 2707 CAAGAAGCGTCTGAAAGATGCTGGCCACAACACCAATGTTGGTGATGAAGGCGGTTTTGC 2766 Query 2295 ACC 2297 || Sbjct 2767 TCC 2769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156032379745956