Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1792 215 1e-53 seq2673 158 2e-36 >seq1792 Length=5876 Score = 215 bits (238), Expect = 1e-53 Identities = 243/324 (75%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||||| || |||||||| | |||| Sbjct 5030 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAGCAGTGGGAGCCGACTTGTTCG 4971 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | ||| ||| ||||||| Sbjct 4970 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCAGTAGCAAGGTTAACC 4912 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 || | || ||||| || |||| |||| ||||| |||||| ||||| ||| Sbjct 4911 GCATAGGGG-----AGCCGTAGAGAAATCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTA 4857 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| ||||||||||||| |||||| | ||| Sbjct 4856 TAGACCCGAAACCGGGTGATCTATCCATGAGCAGGTTGAAGGTTGGGTAACACTAACTGG 4797 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||| |||||||| | || |||||||||||||| Sbjct 4796 AGGACCGAACCCACTGTCGTTGAAAAGCCAGGGGATGACTTGTGGATAGGGGTGAAAGGC 4737 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| || |||||| || Sbjct 4736 TAATCAAACTCGGTGATAGCTGGT 4713 >seq2673 Length=9083 Score = 158 bits (174), Expect = 2e-36 Identities = 240/336 (71%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| || ||||| | || ||||| Sbjct 2958 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTTTGCTTACAATCCGTTGGAGCA 2900 Query 61 GAGTGATTCG-GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAG 119 | | | ||||| |||||||||||| | ||||||||| |||||||| | | Sbjct 2899 CCCTTGTAGGTGTGACAGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGCGATATGTGG 2840 Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178 ||||||||| | | || | |||||| || ||||||||| || || ||||||| Sbjct 2839 CGAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGATTC 2784 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 ||| | | |||||| |||| | |||||||| ||| | |||||||||| |||| Sbjct 2783 AGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGT 2724 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 || ||| |||||||||||||| | |||||||| | |||||| | || || Sbjct 2723 AAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGGATA 2664 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| | |||||| || Sbjct 2663 GGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGT 2628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972764298240