Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1164 138 2e-30 seq3465 122 2e-25 >seq1164 Length=3755 Score = 138 bits (152), Expect = 2e-30 Identities = 192/257 (75%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| | ||||| ||||| |||| |||||| |||| || || |||||| ||||| | Sbjct 3110 GCCAGCAGGTTTACCTTGAATAAATCAGAGTGCTCAATACAAGCGTTTGCTTGAATAGCT 3169 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | ||||||||||| || ||||| | ||||||| ||||||||| |||||| || | | Sbjct 3170 CATCATGGAATAATGAAACAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTT 3226 Query 185 AATGATTAATAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTT 242 |||| |||| ||||| | |||||| | ||| ||| | | ||||||||||||| | Sbjct 3227 AATGGTTAAGAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGT 3285 Query 243 GGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| || || |||| | | |||||||| || ||||| |||| ||||||||||| Sbjct 3286 GGACCGTAGTG-AGACGCCCAATAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA- 3343 Query 302 TGAACGAAAGTTAGGGG 318 |||||||||| || || Sbjct 3344 AGAACGAAAGTCAGAGG 3360 >seq3465 Length=189132 Score = 122 bits (134), Expect = 2e-25 Identities = 183/248 (74%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| ||||| |||| | |||| |||| || || |||||| ||||| | | |||||| Sbjct 17779 TTTACCTTGAATAAATCAAAGTGCTCAATACAAGCGTTTGCTTGAATAGCTCATCATGGA 17720 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| || ||||| | ||||||| ||||||||| |||||| || | ||||| |||| Sbjct 17719 ATAATGAAACAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTTAATGGTTAA 17663 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTTGGA-TTTAT 250 ||||| | |||||| | ||| ||| | | ||||||||||||| |||| || Sbjct 17662 AAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGTGGACCGTAG 17604 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 || |||| | | |||||||| || ||| |||| ||||||||||| |||||||| Sbjct 17603 TG-AGACGCCCAATAGCGAAAGCATTTGCCAGATATGTCTTCATTAATCA-AGAACGAAA 17546 Query 311 GTTAGGGG 318 || || || Sbjct 17545 GTCAGAGG 17538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915166412160