Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1792 93.3 4e-17 seq2673 87.8 2e-15 >seq1792 Length=5876 Score = 93.3 bits (102), Expect = 4e-17 Identities = 133/185 (72%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| ||||| ||| |||||| ||||| |||| Sbjct 5491 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCGATAAGCTTCGGG 5432 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGAT----ATATT 122 || |||| ||| ||||||| |||| || |||||||| ||||| | ||| Sbjct 5431 GAGGCGGCAAATATCCTGTGATCCGGAGATTTCTGAATGGGGAAACCCACTTACCATAAG 5372 Query 123 GGAGATATATCATAACG-----CTAGGC--GTTAGGCGAACGTGGGGAACTGAAACATCT 175 | || ||| ||| | | ||| | | ||||||||| |||||| |||||||||| Sbjct 5371 GTAGGTATCGCATGATGAATACATAGTCATGCGAGGCGAACGAGGGGAAGTGAAACATCT 5312 Query 176 AAGTA 180 |||| Sbjct 5311 CAGTA 5307 >seq2673 Length=9083 Score = 87.8 bits (96), Expect = 2e-15 Identities = 92/116 (79%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 ||| ||||||||||||| ||| ||| |||| ||||||||||||| ||| |||||| ||| Sbjct 3510 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTCGTAATCTGCGATAAG 3452 Query 61 CTACGGGGATTGGCACATACGA--ATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | | | | |||| ||||||| ||| ||||||||||| ||||| Sbjct 3451 CCTCGGGGAGTTG-ATAAACGAGCTATGATCCGAGGATTTCCGAATGGGGAAACCC 3397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476783048270