Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq989 426 4e-117 seq2673 324 4e-86 >seq989 Length=5214 Score = 426 bits (472), Expect = 4e-117 Identities = 336/401 (84%), Gaps = 1/401 (0%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| Sbjct 1409 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTT 1350 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||| ||||||||||||||||||||| |||||| | | |||| | | |||||||||| Sbjct 1349 AATCGGATTTACTGGGCGTAAAGCGTGCGTAGGCGGCTTTTTAAGTCGGATGTGAAATCC 1290 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 ||| ||||||| ||||||||||||| | |||| ||||||| || ||||| ||| Sbjct 1289 CCGAGCTTAACTTGGGAATTGCATTCGATACTGGGAAGCTAGAGTATGGGAGAGGATGGT 1230 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| ||||||| |||||||||||||| || |||||||| ||| ||||||||||| Sbjct 1229 AGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGC 1170 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 |||| |||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1169 AGCCATCTGGCCTAATACTGACGCTGAGGTACGAAAGCATGGGGAGCAAACAGGATTAGA 1110 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGG-ATTTACTTCCTTG 368 ||||||||||||||| ||| |||||||| || ||||| ||||||| ||| | || Sbjct 1109 TACCCTGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAGGCTTTA 1050 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || |||||||||| |||| ||||||||||||| ||| Sbjct 1049 GTGGCGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTAC 1009 >seq2673 Length=9083 Score = 324 bits (358), Expect = 4e-86 Identities = 324/414 (78%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5052 TACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 4993 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121 ||||||| |||||||| ||||||||||| | || |||||| | ||| | | | || Sbjct 4992 AAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCT-TGTCGCGTCTGCTG 4934 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCA 180 ||||| ||| |||| ||||| || |||| | | || | || | |||||||| | | Sbjct 4933 TGAAAACCCGAGGCTCAACCTCGGGCCTGCAGTGGGTACGGGCAAG-CTAGAGTGCGGTA 4875 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | ||||||||| ||||||| ||| |||||| |||||| ||||||||||| || Sbjct 4874 GGGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGAT 4815 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||||| | ||||| ||||||||| | | ||||||| |||||||| ||| Sbjct 4814 GGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAAC 4755 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360 |||||||||||||||||||||||| ||| |||||| | |||||| ||| ||| | | Sbjct 4754 AGGATTAGATACCCTGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTT 4695 Query 361 C-----TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || || |||||||||||| | ||||| ||||||||||| ||| Sbjct 4694 CCACGGTTTCT--GTGTCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTAC 4643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289552671680