Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2673 253 3e-65 seq1792 154 2e-35 >seq2673 Length=9083 Score = 253 bits (280), Expect = 3e-65 Identities = 212/254 (83%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||| || |||| | || || |||| Sbjct 1467 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACGTCCACTTGC-GTGTTAGCAC 1525 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 |||||||||||||||||||||||||||||||| || |||||||| ||||||| || Sbjct 1526 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCACTGGTCTCTGCGGCCACCACACCCTTT 1585 Query 119 --CAA-CACGTCGTTCACCAGCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 ||| || || | | | || | |||| ||||||||||||||||||||||| |||||| Sbjct 1586 CCCAAGCAAGTTGGT-ATAAGTGGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTT 1644 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||||| |||||| ||||| ||| | ||| | ||||||||||||||||||||||||||| Sbjct 1645 GCCGAGTTCCTTCACCACGATTCTCTCGATCTCCTTAGTATTCTCTACCTGACCACCTGA 1704 Query 235 GTCGGTTTACGGTA 248 |||||||| |||| Sbjct 1705 GTCGGTTTGGGGTA 1718 >seq1792 Length=5876 Score = 154 bits (170), Expect = 2e-35 Identities = 187/252 (74%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||| ||| || ||||| || |||| | || || ||| Sbjct 3673 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 3731 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | || |||||||| |||||||| || || | |||| | | ||| ||||||| Sbjct 3732 GTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCTGCCAATAGCTCAA 3791 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || ||| | ||||| ||| || ||||||||||||||||||| ||||||||| Sbjct 3792 GGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 3851 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| | || ||||| | | | ||| || || | ||| |||||||||||||||| Sbjct 3852 CTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCTTTGGTCTACTCGACCTGACCACCTGTGT 3911 Query 237 CGGTTTACGGTA 248 ||||||| |||| Sbjct 3912 CGGTTTAGGGTA 3923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694375311910