Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1792 178 1e-42 seq2673 105 6e-21 >seq1792 Length=5876 Score = 178 bits (196), Expect = 1e-42 Identities = 121/136 (89%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 ||||||||||| | |||| || | | | ||| |||||||| |||| |||||||||||| Sbjct 3802 GGACTTGCTCCTTGAGCTATTGGCAGCCACAGAAACCAGGCCCCTGCAACTGTTTATTAA 3743 Query 83 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3742 AAACATAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGATGCCTGCCCGGTGCT 3683 Query 143 GGAAGGTTAATTGATG 158 |||||||||||||||| Sbjct 3682 GGAAGGTTAATTGATG 3667 >seq2673 Length=9083 Score = 105 bits (116), Expect = 6e-21 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 || || ||| ||||| | ||||||||||| ||||||||||| | ||| |||||| Sbjct 1573 GGCCGCAGAGACCAGTGGGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCTAACACGC 1514 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 1513 AAGTGGACGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAA 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476783048270