Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1792 560 3e-157 seq2673 304 3e-80 >seq1792 Length=5876 Score = 560 bits (620), Expect = 3e-157 Identities = 381/427 (89%), Gaps = 1/427 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||| |||||||||| |||||||| ||||||||||| ||| | |||||||||| Sbjct 3479 CGCGGGTACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGC 3538 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3539 GCCCCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3598 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | Sbjct 3599 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTAC 3658 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 3659 GCTAACCCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTT 3718 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| | | Sbjct 3719 TCGTGTTTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGCT 3778 Query 301 GGCATGAGCTTACGGAGCAAGTCCT-TCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359 | || |||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| Sbjct 3779 GCCAATAGCTCAAGGAGCAAGTCCTATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTAC 3838 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||| || ||||||||||||||||| | |||||||||||||||| ||||| | ||| ||| Sbjct 3839 GGTACCATTTTGCCTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCTTTGGTCTACTCGACC 3898 Query 420 CAACCAC 426 ||||| Sbjct 3899 TGACCAC 3905 >seq2673 Length=9083 Score = 304 bits (336), Expect = 3e-80 Identities = 321/418 (77%), Gaps = 5/418 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || | | ||||||| | |||| |||||||||||| | ||||| Sbjct 1284 GCATCTTTACTCGTAATGCAATTTCGCCGAGTTCATGGTGGAGACAGCTGGGAAGTCGTT 1343 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1344 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 1403 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG--CGTTAGCTAACCCCA 190 | ||||| ||||||||||| ||||||| || | ||||||| || |||||| | Sbjct 1404 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCAAAGCTTCGACCGAAGTCTAACCTCT 1463 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||||||||| ||||||||||||||||| || ||||||||||||| |||||| || Sbjct 1464 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACGTCCACTTGCGTGTTAGC 1523 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC- 309 | | ||||||||||| ||||||||||| | ||||| ||| || || || | Sbjct 1524 ACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCACTGGTCTCTGCGGCCACCACACCCT 1583 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 || | ||||||| | | ||| | ||||||||||||||||||| | | ||| Sbjct 1584 TTCCCAAGCAAGTTGGTATAAGTGGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTT 1643 Query 370 TGCCTAGTTCCTTC-CCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||| ||||||||| || ||| ||||||| | | |||| |||||||||||| ||||| Sbjct 1644 TGCCGAGTTCCTTCACCACGA-TTCTCTCGATCTCCTTAGTATTCTCTACCTGACCAC 1700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260753728640