Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2673 293 5e-77 seq1792 259 1e-66 >seq2673 Length=9083 Score = 293 bits (324), Expect = 5e-77 Identities = 288/376 (77%), Gaps = 28/376 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| |||||| || || ||||||| || ||||| Sbjct 1284 GCATCTTTACTCGTAATGCAATTTCGCCGAGTTCATGGTGGAGACAGCTGGGAAGTCGTT 1343 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1344 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 1403 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTG--CTCTAACAGAT 184 ||||||| ||||||||||||||||||||| |||| ||||||| | |||||| | Sbjct 1404 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCAAAGCTTCGACCGAAGTCTAACCTCT 1463 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 || |||||||||||||||||||||||||||||| | ||||| || |||||| ||||| Sbjct 1464 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACGTCCACTTGCGTGTTAGC 1523 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---------- 294 | |||||||||||| |||||||||||||| || ||||||||||| Sbjct 1524 ACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCACTGGTCTCTGCGGCCACCACACCCT 1583 Query 295 -------------TGTCATA---GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 || ||| | ||| ||||||||||| ||||||||||| ||||| Sbjct 1584 TTCCCAAGCAAGTTGGTATAAGTGGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTT 1643 Query 339 TGCCGAGTTCCTTAAC 354 ||||||||||||| || Sbjct 1644 TGCCGAGTTCCTTCAC 1659 >seq1792 Length=5876 Score = 259 bits (286), Expect = 1e-66 Identities = 233/293 (80%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| | ||||||| ||| || | | ||||||| |||| Sbjct 3485 TACACCGCATCTTCACGGCGATTTCGATTTCACTGAGCCTCTGCTGGAGACAGCGCCCCC 3544 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3545 ATCATTATGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 3604 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| | | |||||| || | ||||| Sbjct 3605 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAAC 3664 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||||||||||||||||| ||| ||||||| || ||| || | Sbjct 3665 CCCATCAATTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTCGTGT 3724 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC 293 | ||||| || ||||||| |||||||| || |||||| | |||| ||| Sbjct 3725 TTGCAGAGTGCTATGTTTTTAATAAACAGTTGCAGGGGCCTGGTTTCTGTGGC 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062361009920