Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2673 475 1e-131 seq989 473 4e-131 >seq2673 Length=9083 Score = 475 bits (526), Expect = 1e-131 Identities = 411/502 (82%), Gaps = 12/502 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 4645 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 4586 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-GACCCCT 119 | || ||||||||| |||||||||||||||||||||| |||||||| | || | Sbjct 4585 GCGGATTAATTCGATGCAACGCGAAGAACCTTACCAAGGCTTGACATATACGAGAACGGG 4526 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGA-GTG-ACAGGTGATGCATGGTTGTCGT 177 | ||| || ||| | ||| || ||| || ||||||| |||||||||||||| Sbjct 4525 CCAGAAAT---GGTCAACTCTTTGG---ACACTCGTATACAGGTGGTGCATGGTTGTCGT 4472 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||| |||||||||| ||||||||||||||||| || || Sbjct 4471 CAGCTCGTGTCGTGAGATGTTCGGTTAAGTCCGGCAACGAGCGCAACCCTCGTCCTATGT 4412 Query 238 TGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 ||||| || ||| | |||| |||| | ||||||| | ||| |||||||||||| Sbjct 4411 TGCCAGCACGTTATGGTGGGAACTCATGGGATACTGCCGTGGTCAACACGGAGGAAGGTG 4352 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||||||||||||||||||||| ||||||| ||| | ||||||||||| | Sbjct 4351 GGGATGACGTCAAATCATCATGCCCCTTATGTCTTGGGCTTCACGCATGCTACAATGGCC 4292 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 ||||||||||| |||| |||||||||| ||| ||||||| ||||| | |||||||||| Sbjct 4291 GATACAAAGGGCTGCGATACCGCGAGGTGGAGCGAATCCCAAAAAGTCGGTCTCAGTTCG 4232 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | Sbjct 4231 GATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAA 4172 Query 475 TGCTACGGTGAATACGTTCCCG 496 ||| ||||||||||||||||| Sbjct 4171 CGCTGCGGTGAATACGTTCCCG 4150 >seq989 Length=5214 Score = 473 bits (524), Expect = 4e-131 Identities = 407/499 (82%), Gaps = 7/499 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1011 TACGGTCGCAAGACTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 952 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| ||||||||| | || | || Sbjct 951 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATAGTAAGAACTTTC 892 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || ||| |||||||| || | ||||||| ||||||| ||||||| Sbjct 891 CAGAGATGGATTGGTG---CCTTCGGGA-ACTTACATACAGGTGCTGCATGGCTGTCGTC 836 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 835 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTTTCCTTATTT 776 Query 239 GCCATCA-TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 |||| || || | |||| ||| |||| |||||| ||||||||| ||||||||| ||| Sbjct 775 GCCAGCACTTCGGGTGGGAACTTTAAGGATACTGCCAGTGACAAACTGGAGGAAGGCGGG 716 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 ||||||||||| |||||||| |||||| || ||||||||||||||||||||||| | Sbjct 715 GACGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGTCGG 656 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 ||||||||| || | |||| | || |||| || |||| | || ||| |||| Sbjct 655 TACAAAGGGTTGCTACCTAGCGATAGGATGCTAATCTCAAAAAGCCGATCGTAGTCCGGA 596 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 ||| |||||||||||||||| |||||| ||||||||||||||||| |||||| |||| Sbjct 595 TTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCGGATCAGAATGC 536 Query 478 TACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 535 CGCGGTGAATACGTTCCCG 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503944803200