Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3626 206 4e-51 seq1164 161 2e-37 seq3485 149 1e-33 seq3632 100 5e-19 >seq3626 Length=653264 Score = 206 bits (228), Expect = 4e-51 Identities = 205/260 (79%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || |||| ||||||||| ||||| |||| | |||||||||||||||||||| Sbjct 343680 ACCCGCTGACTCCACCAGTGTAGCATGCGTGAAGCCCCGGACATCTAAGGGCATCACAGA 343621 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||| || |||| || | |||| | || | ||||||||||||| | Sbjct 343620 CCTGTTATCGC-TCAATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGTTAT-- 343565 Query 122 ACCAACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || |||| || ||| | | ||||||||||| || |||||| ||||||||||||| Sbjct 343564 ACGAACCCTAA--GATTCGCCAACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAAT 343507 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| | Sbjct 343506 AAACCAGACAAATCACTCCTCCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGA 343447 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 343446 GAAAGAGCTTTCAATCTGTC 343427 >seq1164 Length=3755 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| Sbjct 3716 CTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACCA 3657 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||| |||||||||| |||||||||| Sbjct 3656 ACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTGTC 3600 >seq3485 Length=179930 Score = 149 bits (164), Expect = 1e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||| ||||||| ||||| |||||||||||||||||||||| Sbjct 55462 CTATTTAGCAGGCTAGAGTCTCGCTCGTTATTGGAATAAACCAGACAAATCACTCCACCA 55521 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 |||||||||||||||||||||||| || |||| |||||||||| |||||||| Sbjct 55522 ACTAAGAACGGCCATGCACCACCAAACACCAAATCGAGAAAGAGCTTTCAATCTG 55576 >seq3632 Length=721983 Score = 100 bits (110), Expect = 5e-19 Identities = 167/231 (72%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 27 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATT 86 ||||||| |||| | |||||||| || ||||||| |||| || || |||| || | Sbjct 326750 CGCGTGCAGCCCTGGACATCTAATGGT-TCACAGAGCTGTAATCGC-TCAATCT-CGTGC 326694 Query 87 GGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG-GCTAT 145 || | | || | ||| ||| |||| ||| || |||| ||| | || || || Sbjct 326693 GGATACACACCGCTTATCCGACTAGGAAGTCAG--ACGAACCCTAGCATACGGCAGCGAT 326636 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 ||| || | || ||| || ||||||||| | ||| | ||||||||||||||||| || Sbjct 326635 TTATCACGCTAGAGTCGCGCTCGTTATCGCACA-AACGATACAAATCACTCCACCAATTA 326577 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 || |||||||||| ||| || | | | |||| |||||||||| || ||||| Sbjct 326576 AG-ACGGCCATGCTCCAGCAGCAACA-AATCGAGAAAGAGCTTTCTATCTG 326528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796771671270