Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3264 363 3e-98 seq3369 275 1e-71 seq3669 152 9e-35 seq2673 84.2 4e-14 seq1792 73.4 7e-11 >seq3264 Length=24601 Score = 363 bits (402), Expect = 3e-98 Identities = 239/264 (91%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 18899 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 18840 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 18839 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 18780 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 18779 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 18720 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 18719 CCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAG 18660 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 18659 GCCACGCTTTCGCGGTCTGTACTC 18636 >seq3369 Length=59888 Score = 275 bits (304), Expect = 1e-71 Identities = 225/264 (85%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGG-TCTAAACCC-AGCT-CACGTTCCCTA-TT 92 |||||||||||||||||||||||| ||||| | ||||||| |||| ||||||| ||| || Sbjct 12987 GTAGGGTAAAACTAACCTGTCTCACGACGGCTGTAAACCCCAGCTACACGTTCACTAATT 13046 Query 93 AGTGGGTGAA-CAAT-CCAACGCTTACC-GAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||| | ||| |||| ||||||||| | ||||||||||||| |||||||||| |||| | Sbjct 13047 AGTGAGGGAAACAATGCCAACGCTTGGCAGAATTCTGCTTCGCTATGATAGGATGAGCTG 13106 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 13107 ACATCGAAGGATCTAAAAGCAACGTCGCTATGGACGCTTGGATGCCACAAGCCAGTTATC 13166 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| ||||||| || ||| ||| ||||||||||||| Sbjct 13167 CCTGTGGTAACTTTTCTGACACCTCTTACCGGAAACAATCAGGATTAAAAGGATCGATAG 13226 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| ||||| ||| |||| || Sbjct 13227 GCCACGCTTTCGCGGTCTGTACTC 13250 >seq3669 Length=3217881 Score = 152 bits (168), Expect = 9e-35 Identities = 182/242 (75%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||| | |||||||||||||||| ||| || ||| | ||||||||||||||| || Sbjct 2630390 CAGAATGGTAAAACTAACCTGTGTCACGATTATCTGTTCAAAGCTCACGTTCCCTAATAT 2630331 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 || ||||| ||||||||||| | ||||||| | | | |||||||| || Sbjct 2630330 TGAGTGAATTATCCAACGCTTGAAAATGTCTGCTTTTTACTAAAAAACAGAGCCGAAATG 2630271 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||| |||| ||||||||||| |||| ||||| ||||| ||||||||||||||| | Sbjct 2630270 GAAGGTTCAATAAGCAACGTCGATATGGACGCTAGGCTG-TGCAAGCCAGTTATCCCGGG 2630212 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCC 272 | |||||||||| ||||||| || ||| || | || | |||||||||||||||| Sbjct 2630211 GCAAACTTTTCTGACACCTCTTAACTGAAACAATCAA--GATTAAAAGGATCGATAGGCC 2630154 Query 273 AC 274 || Sbjct 2630153 AC 2630152 >seq2673 Length=9083 Score = 84.2 bits (92), Expect = 4e-14 Identities = 129/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 718 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 777 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 778 CTTGGGACCAACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 834 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 835 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 889 >seq1792 Length=5876 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| || ||||| | || Sbjct 2924 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCTCTTTAAATGGCGAACAGCCATACC 2983 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| ||| || | | |||| || ||||||||||||| | |||| | | Sbjct 2984 CTTGGGACCTGCTTCAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCAAACACC 3040 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| ||| ||||| Sbjct 3041 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCAGAGTACCTTTT 3095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854368643520