Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1792 221 2e-55 seq2673 197 3e-48 >seq1792 Length=5876 Score = 221 bits (244), Expect = 2e-55 Identities = 240/312 (77%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88 |||||||| | |||||| ||| |||| |||| || ||||| ||||||| Sbjct 3385 ACGCCAGTTGCTATGGAGCCATCCTTGAAATACCACCCTGGTAATATTGAGGTTCTAACT 3326 Query 89 CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 | | | ||| || ||| |||| |||| |||| | ||| |||||||||||||||||| Sbjct 3325 CTGTCC-CGT-TATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTC 3269 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 ||||| ||||||||||||||| | | ||| | | |||||| ||| ||||| || ||| Sbjct 3268 TCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCG 3209 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | ||| ||||||||||| | | || ||||||| |||| |||||| |||||| |||||| Sbjct 3208 TAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAA 3149 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 || || |||| |||||||| ||| ||| |||||| |||| |||||| ||||||||||| | Sbjct 3148 GTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 3089 Query 328 ACCCTGGGGATA 339 || ||||||||| Sbjct 3088 ACTCTGGGGATA 3077 >seq2673 Length=9083 Score = 197 bits (218), Expect = 3e-48 Identities = 232/312 (74%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC- 88 |||||||| ||| |||| | ||||| |||| || | || | ||||| |||||| Sbjct 1179 ACGCCAGTGTTCGTGGAGTCATTGTTGAAATACCACTCTGGTCATTCTGGATATCTAACT 1120 Query 89 -CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC 147 ||||| | | | | | ||||||||| | | ||| ||||| ||||||||||| Sbjct 1119 ACGGACCCTG---ATCGGGTCTTGGGACAGTGCCTGGTGGGTAGTTTAACTGGGGCGGTT 1063 Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||||||||||||||||||| | |||||| | ||| ||| || || | | Sbjct 1062 GCCTCCCAAAAAGTAACGGAGGCGCCCAAAGGTTCCCTCAACCTGGTTGGCAATCAGGTG 1003 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 |||| || ||| ||||| | ||||||| || || || ||| ||||||||||||| Sbjct 1002 GCGAGTGTAAGTGCACAAGGGAGCTTGACTGTGAGACTGACAGGTCGAGCAGGGACGAAA 943 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 |||||| || ||||||||| ||| ||||| || ||||||| ||||||||||| | Sbjct 942 GTCGGGACTAGTGATCCGGCAGTGGCTTGTGGAAGCGCTGTCGCTCAACGGATAAAAGGT 883 Query 328 ACCCTGGGGATA 339 ||| ||||||| Sbjct 882 ACCTCGGGGATA 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982363945920